Difference between revisions of "Sporulation"
(→Important reviews) |
(→Sporulation proteins/ other) |
||
Line 177: | Line 177: | ||
* ''[[coxA]]'' | * ''[[coxA]]'' | ||
* ''[[csbX]]'' | * ''[[csbX]]'' | ||
+ | * ''[[csfB]]'' | ||
* ''[[ctaA]]'' | * ''[[ctaA]]'' | ||
* ''[[ctpB]]'' | * ''[[ctpB]]'' | ||
Line 195: | Line 196: | ||
* ''[[fisB]]'' | * ''[[fisB]]'' | ||
* ''[[ftsY]]'' | * ''[[ftsY]]'' | ||
− | + | ||
* ''[[glcU]]'' | * ''[[glcU]]'' | ||
* ''[[glgA]]'' | * ''[[glgA]]'' |
Revision as of 13:12, 6 April 2015
Parent categories | |
Neighbouring categories |
|
Related categories | |
Contents
- 1 Genes in this functional category
- 2 Important reviews
- 3 Important original publications
- 4 Important web site: SporeWeb
- 5 Back to categories
Genes in this functional category
Spore coat proteins
Class I
- these proteins completly cover the membrane around the forespore
- early localizing spore coat proteins
Class II
- these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
- early localizing spore coat proteins
Class III
- these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
- early localizing spore coat proteins
Class IV
- late localizing spore coat proteins (only after completion of engulfment)
- intermediate between classes III and V
Class V
- late localizing spore coat proteins (only after completion of engulfment)
- localize exclusively to phase dark spores
- localize simultaneously to both poles of the spore
Class VI
- late localizing spore coat proteins (only after completion of engulfment)
- most delayed initial localization
- localize excluseively to phase bright spores
not yet assigned
- cgeA
- cgeB
- cgeC
- cgeD
- cgeE
- cmpA
- cotC
- cotF
- cotH
- cotI
- cotJA
- cotJB
- cotJC
- cotR
- cotSA
- cotV
- cotX
- cotY
- gerQ
- gerR
- gerT
- ldt
- safA
- spsB
- yabG
- ygaK
- ydhD
- yhbB
- yheC
- yisJ
- yjdH
- ykvP
- yobN
- yodI
- ypeP
- yqfT
- ywqH
Important publications on the spore coat
Spore coat protein/ based on similarity
Small acid-soluble spore proteins
Non-homologous end joining DNA repair
Sporulation proteins/ other
- coxA
- csbX
- csfB
- ctaA
- ctpB
- cwlC
- cwlD
- cwlH
- dacB
- dacF
- dapA
- dapG
- divIB
- divIC
- exoA
- exuR
- exuT
- fabL
- fin
- fisB
- ftsY
- lonB
- lysA
- lytH
- mbl
- mcsA
- mcsB
- mmgA
- mmgB
- mmgC
- mmgD
- mmgE
- murB
- murG
- mutTA
- nfo
- pbpF
- pbpG
- pbpI
- pdaA
- pdaB
- phoB
- phoP
- phoR
- prkA
- remA
- rsfA
- sbp
- scoA
- scoB
- seaA
- sigF
- sigG
- sodF
- splA
- splB
- spmA
- spmB
- spoIIAA
- spoIIAB
- spoIID
- spoIIIAA
- spoIIIAB
- spoIIIAC
- spoIIIAD
- spoIIIAE
- spoIIIAF
- spoIIIAG
- spoIIIAH
- spoIIIC
- spoIIID
- spoIIM
- spoIIP
- spoIIQ
- spoIIR
- spoIISA
- spoIVA
- spoIVB
- spoIVCA
- spoIVCB
- spoIVFA
- spoIVFB
- spoVAA
- spoVAB
- spoVAC
- spoVAF
- spoVB
- spoVD
- spoVE
- spoVFA
- spoVFB
- ypfB
- yphA
- ypjB
- ypqA
- ypzA
- yqcK
- yqfC
- yqfD
- yqfQ
- yqfU
- yqfX
- yqfZ
- yqhG
- yqhH
- yqhP
- yqhQ
- yqiQ
- yqxA
- yqzG
- yrkC
- yrrD
- yrrS
- ytaF
- ytcC
- yteA
- yteV
- ytfI
Newly identified sporulation proteins (based on transcription profiling)
- abnA
- acdA
- acoA
- acoB
- acoC
- acoL
- acoR
- alkA
- amiE
- amyC
- amyD
- amyX
- araL
- araM
- bglS
- bmrC
- bmrD
- bpsA
- bpsB
- citA
- citH
- comER
- cypA
- degQ
- fadA
- fadF
- fadM
- fadN
- ggt
- hemZ
- ispA
- kapD
- kbl
- licA
- licB
- licC
- licH
- lplD
- mdxE
- mdxF
- mdxG
- melA
- msmE
- murP
- murQ
- murR
- nrnB
- nagZ
- pgcM
- pucH
- racA
- tdh
- sigE
- spoIIE
- spoVC
- ugd
- xpaC
- yaaC
- yabS
- ybbC
- ybeF
- ybfJ
- ycgI
- ycgH
- ycgL
- yclF
- yclG
- yczM
- ydzH
- ydzR
- yerA
- yetF
- yezF
- ygzA
- ygzC
- yfhM
- yfhS
- yflJ
- yflN
- yfmA
- yhaR
- yheA
- yhcT
- yhcW
- yhdB
- yhdC
- yhdF
- yheF
- yhfA
- yhfN
- yhjQ
- yhzD
- yhzF
- yisN
- yitE
- yitQ
- yizC
- yizD
- yjaU
- yjaZ
- yjbE
- yjnA
- yjqC
- yjzC
- yjzK
- ykjA
- ykoN
- ykoP
- ykoQ
- ykoS
- ykoT
- ykoY
- ykpC
- ykuS
- ykwB
- ykzD
- ykzE
- ykzH
- ylaK
- yloB
- ylxY
- ymaF
- ymfD
- ymfH
- ymfI
- ymfJ
- yndM
- ynfE
- yngK
- yngL
- ynzE
- yoaI
- yoaM
- yoaQ
- yoaU
- yocN
- yodU
- yodL
- yodN
- yojB
- yoqH
- yosA
- yozD
- yozE
- yozF
- yozN
- yozP
- ypeP
- ypeQ
- yppC
- yppD
- ypqP
- yptA
- ypuI
- yqcI
- ypzC
- yqaN
- yqaO
- yqeC
- yqgE
- yqgO
- yqhO
- yqhR
- yqhV
- yqjB
- yqjC
- yrbE
- yrbD
- yrbG
- yrdN
- yrrI
- yrrT
- yrzA
- yrzE
- yrzF
- yrzI
- yrzK
- ysnE
- ytaG
- ytcA
- ytcB
- ytdA
- yteT
- ythA
- ythB
- ytvB
- ytwI
- ytzC
- ytzH
- yubC
- yueG
- yufS
- yugF
- yugS
- yugT
- yumB
- yunC
- yurZ
- yusW
- yutC
- yutG
- yuzE
- yuzF
- yvaC
- yvaG
- yvaK
- yvaM
- yvdA
- yvnB
- ywaF
- ywbB
- ywkF
- ywbA
- ywcI
- ywhK
- ywhL
- ywmA
- ywnG
- ywoC
- ywoD
- ywqH
- ywqI
- ywqK
- ywqL
- ywrK
- yxbA
- yyaL
- yybP
- yycE
- yycN
- yycO
- yycP
- yycQ
- yyzB
Important reviews
Important original publications
Important web site: SporeWeb
- SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
- You can find:
- detailed review-like descriptions of all sporulation stages,
- schematic representations of regulatory events during every stage,
- links to specific regulators and their regulons,
- access to detailed Excel sheets of all sporulation-specific regulons,
- Cytoscape-generated layouts of regulon interactions during a specific stage,
- a tool to generate your own Cytoscape interaction figure for specific genes of interest,
- heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
- direct links to other knowledge platforms, such as SubtiWiki,
- an extensive list of references for further detailed information.
- The website is self explanatory, but you can also take a quick look at the short introduction video.
- Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.
Robyn T Eijlander, Anne de Jong, Antonina O Krawczyk, Siger Holsappel, Oscar P Kuipers
SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis.
Nucleic Acids Res: 2014, 42(Database issue);D685-91
[PubMed:24170806]
[WorldCat.org]
[DOI]
(I p)