Difference between revisions of "Translation"

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(→‎Rrna modification and maturation/ based on similarity)
(→‎tRNA modification and maturation)
 
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−
 
 
{{CategoryTree
 
{{CategoryTree
 
|Parents=
 
|Parents=
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* 3.3.5. [[Proteolysis]]
 
* 3.3.5. [[Proteolysis]]
 
|Related=
 
|Related=
−
none
+
* [[ribosomal proteins]]
 +
* [[ribosomal RNA]]
 +
* [[5S rRNA]]
 +
* [[16S rRNA]]
 +
* [[23S rRNA]]
 
|}}
 
|}}
  
 
== Genes in this functional category ==
 
== Genes in this functional category ==
  
−
=== Ribosomal rna ===  
+
=== [[Ribosomal RNA]]===  
 
* ''[[rrnA-16S]]''
 
* ''[[rrnA-16S]]''
 
* ''[[rrnA-23S]]''
 
* ''[[rrnA-23S]]''
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* ''[[rrnW-5S]]''
 
* ''[[rrnW-5S]]''
  
−
=== Rrna modification and maturation ===  
+
=== rRNA modification and maturation ===  
−
* ''[[cspR]]''
 
 
* ''[[ksgA]]''
 
* ''[[ksgA]]''
 
* ''[[mrnC]]''
 
* ''[[mrnC]]''
 
* ''[[rimM]]''
 
* ''[[rimM]]''
 +
* ''[[rlmCD]]''
 
* ''[[rluB]]''
 
* ''[[rluB]]''
 
* ''[[rnc]]''
 
* ''[[rnc]]''
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* ''[[yabC]]''
 
* ''[[yabC]]''
 
* ''[[ylbH]]''
 
* ''[[ylbH]]''
 +
* ''[[ylbN]]''
 
* ''[[yloM]]''
 
* ''[[yloM]]''
 
* ''[[yloN]]''
 
* ''[[yloN]]''
 
* ''[[ypsC]]''
 
* ''[[ypsC]]''
 +
* ''[[yrrK]]''
 
* ''[[ytzG]]''
 
* ''[[ytzG]]''
 +
* ''[[yydA]]''
  
 
=== Ribosomal proteins ===  
 
=== Ribosomal proteins ===  
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* ''[[rpmGA]]''
 
* ''[[rpmGA]]''
 
* ''[[rpmGB]]''
 
* ''[[rpmGB]]''
 +
* ''[[rpmGC]]''
 
* ''[[rpmH]]''
 
* ''[[rpmH]]''
 
* ''[[rpmI]]''
 
* ''[[rpmI]]''
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* ''[[rpsU]]''
 
* ''[[rpsU]]''
 
* ''[[ybxF]]''
 
* ''[[ybxF]]''
−
* ''[[yhzA]]''
+
* ''[[rpsNB]]''
−
* ''[[ytiA]]''
+
* ''[[rpmEB]]''
  
 
=== Ribosomal protein/ based on similarity ===  
 
=== Ribosomal protein/ based on similarity ===  
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=== Ribosome assembly ===  
 
=== Ribosome assembly ===  
 
* ''[[cpgA]]''
 
* ''[[cpgA]]''
 +
* ''[[cshA]]''
 +
* ''[[cshB]]''
 +
* ''[[engA]]''
 
* ''[[era]]''
 
* ''[[era]]''
 
* ''[[obg]]''
 
* ''[[obg]]''
 +
* ''[[prp]]''
 
* ''[[rbgA]]''
 
* ''[[rbgA]]''
−
* ''[[yphC]]''
+
* ''[[yaaA]]''
 +
* ''[[yfmL]]''
 
* ''[[yqeH]]''
 
* ''[[yqeH]]''
 
* ''[[ysxC]]''
 
* ''[[ysxC]]''
  
−
=== Trna ===  
+
=== tRNA ===  
 
* ''[[trnA-Ala]]''
 
* ''[[trnA-Ala]]''
 
* ''[[trnA-Ile]]''
 
* ''[[trnA-Ile]]''
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* ''[[trnY-Phe]]''
 
* ''[[trnY-Phe]]''
  
−
=== Trna modification and maturation ===  
+
=== tRNA modification and maturation ===  
 
* ''[[cca]]''
 
* ''[[cca]]''
 +
* ''[[cspR]]''
 
* ''[[fmt]]''
 
* ''[[fmt]]''
 
* ''[[folD]]''
 
* ''[[folD]]''
 
* ''[[gidA]]''
 
* ''[[gidA]]''
 
* ''[[miaA]]''
 
* ''[[miaA]]''
 +
* ''[[mtaB]]''
 +
 +
* ''[[nifZ]]''
 
* ''[[queA]]''
 
* ''[[queA]]''
 
* ''[[queC]]''
 
* ''[[queC]]''
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* ''[[queE]]''
 
* ''[[queE]]''
 
* ''[[queF]]''
 
* ''[[queF]]''
 +
* ''[[queG]]''
 
* ''[[rnpA]]''
 
* ''[[rnpA]]''
 
* ''[[rnpB]]''
 
* ''[[rnpB]]''
 
* ''[[rnz]]''
 
* ''[[rnz]]''
 
* ''[[rph]]''
 
* ''[[rph]]''
 +
* ''[[tcdA]]''
 
* ''[[tgt]]''
 
* ''[[tgt]]''
 
* ''[[thdF]]''
 
* ''[[thdF]]''
 +
* ''[[thiI]]''
 
* ''[[tilS]]''
 
* ''[[tilS]]''
 
* ''[[trmB]]''
 
* ''[[trmB]]''
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* ''[[truA]]''
 
* ''[[truA]]''
 
* ''[[truB]]''
 
* ''[[truB]]''
 +
* ''[[tsaB]]''
 +
* ''[[tsaC]]''
 +
* ''[[tsaD]]''
 +
* ''[[tsaE]]''
 
* ''[[yaaJ]]''
 
* ''[[yaaJ]]''
 
* ''[[yacF]]''
 
* ''[[yacF]]''
 
* ''[[yfjN]]''
 
* ''[[yfjN]]''
 +
* ''[[ylbM]]''
 
* ''[[ymcB]]''
 
* ''[[ymcB]]''
−
* ''[[yqeV]]''
 
−
* ''[[ywlC]]''
 
  
−
=== Aminoacyl-trna synthetases ===  
+
* ''[[yrvO]]''
 +
 
 +
=== tRNA modification and maturation/ based on similarity ===
 +
* ''[[yjdI]]''
 +
 
 +
=== Aminoacyl-tRNA synthetases ===  
 
* ''[[alaS]]''
 
* ''[[alaS]]''
 
* ''[[argS]]''
 
* ''[[argS]]''
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* ''[[valS]]''
 
* ''[[valS]]''
 
* ''[[ytpR]]''
 
* ''[[ytpR]]''
 +
 +
==== [http://www.rcsb.org/pdb/101/motm.do?momID=16 Discussion of the structure of aminoacyl-tRNA synthetases] ====
  
 
=== Translation factors ===  
 
=== Translation factors ===  
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* ''[[infB]]''
 
* ''[[infB]]''
 
* ''[[infC]]''
 
* ''[[infC]]''
 +
* ''[[lepA]]''
 
* ''[[prfA]]''
 
* ''[[prfA]]''
 
* ''[[prfB]]''
 
* ''[[prfB]]''
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=== Translation/ other ===  
 
=== Translation/ other ===  
 
* ''[[deaD]]''
 
* ''[[deaD]]''
−
* ''[[def]]''
+
* ''[[defA]]''
 +
* ''[[dtd]]''
 
* ''[[map]]''
 
* ''[[map]]''
 
* ''[[mifM]]''
 
* ''[[mifM]]''
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* ''[[ssrA]]''
 
* ''[[ssrA]]''
 
* ''[[yflG]]''
 
* ''[[yflG]]''
−
* ''[[ykrB]]''
+
* ''[[ynbA]]''
 +
* ''[[yqeL]]''
 
* ''[[yqeT]]''
 
* ''[[yqeT]]''
  
 
=== Translation/ other/ based on similarity ===  
 
=== Translation/ other/ based on similarity ===  
 +
* ''[[yabO]]''
 
* ''[[ydiD]]''
 
* ''[[ydiD]]''
−
* ''[[yefA]]''
 
 
* ''[[yfjO]]''
 
* ''[[yfjO]]''
 
* ''[[yjbO]]''
 
* ''[[yjbO]]''
 
* ''[[yjcK]]''
 
* ''[[yjcK]]''
 +
* ''[[ylxS]]''
 
* ''[[ylyB]]''
 
* ''[[ylyB]]''
 
* ''[[ynaD]]''
 
* ''[[ynaD]]''
 
* ''[[yoaA]]''
 
* ''[[yoaA]]''
−
* ''[[yrvI]]''
+
* ''[[yqeI]]''
 +
* ''[[ywkE]]''
 +
 
 +
 
 +
= Important publications=
 +
<pubmed>22456704 22848659 22905870 24809820 24789973 25796611 26518335  28271488</pubmed>
 +
 
 +
=Back to [[categories]]=

Latest revision as of 09:31, 5 October 2018

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Ribosomal RNA

rRNA modification and maturation

rRNA modification and maturation/ based on similarity

Ribosomal proteins

Ribosomal protein/ based on similarity

Ribosome assembly

tRNA

tRNA modification and maturation

tRNA modification and maturation/ based on similarity

Aminoacyl-tRNA synthetases

Discussion of the structure of aminoacyl-tRNA synthetases

Translation factors

Translation/ other

Translation/ other/ based on similarity


Important publications

Marc Mirande
The Aminoacyl-tRNA Synthetase Complex.
Subcell Biochem: 2017, 83;505-522
[PubMed:28271488] [WorldCat.org] [DOI] (P p)

Koichi Yano, Kenta Masuda, Genki Akanuma, Tetsuya Wada, Takashi Matsumoto, Yuh Shiwa, Taichiro Ishige, Hirofumi Yoshikawa, Hironori Niki, Takashi Inaoka, Fujio Kawamura
Growth and sporulation defects in Bacillus subtilis mutants with a single rrn operon can be suppressed by amplification of the rrn operon.
Microbiology (Reading): 2016, 162(1);35-45
[PubMed:26518335] [WorldCat.org] [DOI] (I p)

Jennifer Shepherd, Michael Ibba
Bacterial transfer RNAs.
FEMS Microbiol Rev: 2015, 39(3);280-300
[PubMed:25796611] [WorldCat.org] [DOI] (I p)

Henri Grosjean, Marc Breton, Pascal Sirand-Pugnet, Florence Tardy, François Thiaucourt, Christine Citti, Aurélien Barré, Satoko Yoshizawa, Dominique Fourmy, Valérie de Crécy-Lagard, Alain Blanchard
Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.
PLoS Genet: 2014, 10(5);e1004363
[PubMed:24809820] [WorldCat.org] [DOI] (I e)

Matthew H Larson, Rachel A Mooney, Jason M Peters, Tricia Windgassen, Dhananjaya Nayak, Carol A Gross, Steven M Block, William J Greenleaf, Robert Landick, Jonathan S Weissman
A pause sequence enriched at translation start sites drives transcription dynamics in vivo.
Science: 2014, 344(6187);1042-7
[PubMed:24789973] [WorldCat.org] [DOI] (I p)

Basma El Yacoubi, Marc Bailly, Valérie de Crécy-Lagard
Biosynthesis and function of posttranscriptional modifications of transfer RNAs.
Annu Rev Genet: 2012, 46;69-95
[PubMed:22905870] [WorldCat.org] [DOI] (I p)

Alex Rosenberg, Lior Sinai, Yoav Smith, Sigal Ben-Yehuda
Dynamic expression of the translational machinery during Bacillus subtilis life cycle at a single cell level.
PLoS One: 2012, 7(7);e41921
[PubMed:22848659] [WorldCat.org] [DOI] (I p)

Gene-Wei Li, Eugene Oh, Jonathan S Weissman
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria.
Nature: 2012, 484(7395);538-41
[PubMed:22456704] [WorldCat.org] [DOI] (I e)


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