RNase Y targets
| Regulator | |
Contents
RNAs that are targeted by RNase Y
mRNAs directly cleaved by RNase Y
- processing of the gapA operon mRNA between cggR and gapA (cggR-gapA-pgk-tpi-pgm-eno), requires the YmcA-YlbF-YaaT complex PubMed
- processing of the ATPase operon mRNA between atpI and atpB (atpI-atpB-atpE-atpF-atpH-atpA-atpG-atpD-atpC), requires the YmcA-YlbF-YaaT complex PubMed
- processing of the dacA-pdxS-pdxT-serS mRNA upstream of dacA, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the ddl-murF mRNA upstream of ddl, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the yfjN leader mRNA, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the glnR-glnA operon mRNA between glnR and glnA, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the hbs leader mRNA PubMed
- processing of the menA leader mRNA, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the metN-metP-metQ operon mRNA between metP and metQ, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the ydiG-rex-tatAY-tatCY operon mRNA between rex and tatAY, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the rplGB-rpsL-rpsG-fusA-tufA operon mRNA between rplGB and rpsL, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the rpoB-rpoC leader mRNA, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the rpoE-pyrG operon mRNA between rpoE and pyrG, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the ruvA-ruvB-yrzS-queA-tgt-yrbF operon mRNA between tgt and yrbF, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the tagA-tagB mRNA upstream of tagA, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the ybfG-ybfF-ybfE operon mRNA between ybfG and ybfF, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the ylxM-ffh-rpsP-ylqC-ylqD-rimM-trmD-rplS operon mRNA between ffh and rpsP, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the yonR-yonS operon mRNA between yonR and yonS, requires the YmcA-YlbF-YaaT complex PubMed
- processing of the yqhL leader mRNA PubMed
- processing of the ywzH-dltA-dltB-dltC-dltD-dltE operon mRNA between ywzH and dltA, requires the YmcA-YlbF-YaaT complex PubMed
- initiates the degradation of rpsO, requires the YmcA-YlbF-YaaT complex mRNA PubMed
- infC-rpmI-rplT mRNA, requires the YmcA-YlbF-YaaT complex PubMed
- leader of the cwlO mRNA, requires the YmcA-YlbF-YaaT complex PubMed
- the RoxS sRNA PubMed
- the ppnKB mRNA PubMed
Riboswitch RNAs cleaved by RNase Y
- the S-box riboswitch RNAs in vivo and in vitro PubMed
- cysE PubMed
- cysH PubMed
- gcvT PubMed
- hisS, requires the YmcA-YlbF-YaaT complex PubMed
- ileS, requires the YmcA-YlbF-YaaT complex PubMed
- ilvB PubMed
- infC PubMed
- metE PubMed
- metH PubMed
- metN PubMed
- mtnK PubMed
- nupG, requires the YmcA-YlbF-YaaT complex PubMed
- pheS PubMed
- proB PubMed
- ribD PubMed
- rpsD PubMed
- prsO PubMed
- sacB PubMed
- tenA PubMed
- thiC PubMed
- thrS, requires the YmcA-YlbF-YaaT complex PubMed
- thrZ, requires the YmcA-YlbF-YaaT complex PubMed
- trpE PubMed
- trpS, requires the YmcA-YlbF-YaaT complex PubMed
- tyrS, requires the YmcA-YlbF-YaaT complex PubMed
- valS PubMed
- yitJ PubMed
- ykoY PubMed
- ylmB PubMed
- yoaD PubMed
- yvbW PubMed
- yxjG PubMed
- yxjH PubMed
- yybP PubMed
Increased RNA amount upon RNase Y depletion
- trpE-trpD-trpC-trpF-trpB-trpA-hisC-tyrA-aroE PubMed
- yhbI-yhbJ-yhcA-yhcB-yhcC-yhcD-yhcE-yhcF-yhcG-yhcH-yhcI PubMed
- ysbA-ysbB PubMed
- yrhG PubMed
- maeA-ywkB PubMed
- nhaC PubMed
- guaC PubMed
- ydaB PubMed
- maeN PubMed
- cimH PubMed
- ynfC PubMed
- yrhE-yrhD PubMed
- yjbC-spx PubMed
- yrhF PubMed
- speD PubMed
- yhfH PubMed
- pabA-pabC PubMed
- yebC PubMed
- yurR-yurQ-frlB-frlO-frlN-frlM-frlD PubMed
- yuxJ PubMed
- lmrA-lmrB PubMed
- yrhH PubMed
- acoA-acoB-acoC-acoL PubMed
- ribU PubMed
- pbpA PubMed
- ytdI PubMed
- cggR-gapA PubMed
- yhdY PubMed
- ywcI PubMed
- yflS PubMed
- several SP-beta prophage genes, exemplified by yorW PubMed
- sinR PubMed
- sinI-sinR PubMed
Decreased RNA amount upon RNase Y depletion
- slrR PubMed (this is likely due to the increased stability of the sinR mRNA upon RNase Y depletion PubMed)
- epsA-epsB-epsC-epsD-epsE-epsF-epsG-epsH-epsI-epsJ-epsK-epsL-epsM-epsN-epsO PubMed (this is likely due to the increased stability of the sinR mRNA upon RNase Y depletion PubMed)
- ctaO PubMed
- lip PubMed
- sunT-bdbA-yolJ PubMed
- yydF-yydG-yydH-yydI-yydJ PubMed
- tapA-sipW-tasA PubMed (this is likely due to the increased stability of the sinR mRNA upon RNase Y depletion PubMed)
- dhbA-dhbC-dhbE-dhbB-dhbF PubMed
- thrZ PubMed
- yfmG PubMed
- sdpA-sdpB-sdpC PubMed
- wprA PubMed
- yxeK-yxeL-yxeM PubMed
- yxbB PubMed
Important publications on RNase Y targets
Aaron DeLoughery, Jean-Benoît Lalanne, Richard Losick, Gene-Wei Li
##Title##
Proc Natl Acad Sci U S A: 2018, 115(24);E5585-E5594
[PubMed:29794222]
[WorldCat.org]
[DOI]
(I p)
Soumaya Laalami, Philippe Bessières, Anna Rocca, Léna Zig, Pierre Nicolas, Harald Putzer
Bacillus subtilis RNase Y activity in vivo analysed by tiling microarrays.
PLoS One: 2013, 8(1);e54062
[PubMed:23326572]
[WorldCat.org]
[DOI]
(I p)
Sylvain Durand, Laetitia Gilet, Philippe Bessières, Pierre Nicolas, Ciarán Condon
Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs.
PLoS Genet: 2012, 8(3);e1002520
[PubMed:22412379]
[WorldCat.org]
[DOI]
(I p)
Martin Lehnik-Habrink, Marc Schaffer, Ulrike Mäder, Christine Diethmaier, Christina Herzberg, Jörg Stülke
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y.
Mol Microbiol: 2011, 81(6);1459-73
[PubMed:21815947]
[WorldCat.org]
[DOI]
(I p)
