Translation

Parent categories	3. Information processing 3.3. Protein synthesis, modification and degradation
Neighbouring categories	3.3.1. Translation 3.3.2. Chaperones/ protein folding 3.3.3. Protein modification 3.3.4. Protein secretion 3.3.5. Proteolysis
Related categories	ribosomal proteins ribosomal RNA 5S rRNA 16S rRNA 23S rRNA
Overview on the categories (Excel file) All genes and their categories (Excel file)

Genes in this functional category

Ribosomal RNA

• rrnA-16S
• rrnA-23S
• rrnA-5S
• rrnB-16S
• rrnB-23S
• rrnB-5S
• rrnD-16S
• rrnD-23S
• rrnD-5S
• rrnE-16S
• rrnE-23S
• rrnE-5S
• rrnG-16S
• rrnG-23S
• rrnG-5S
• rrnH-16S
• rrnH-23S
• rrnH-5S
• rrnI-16S
• rrnI-23S
• rrnI-5S
• rrnJ-16S
• rrnJ-23S
• rrnJ-5S
• rrnO-16S
• rrnO-23S
• rrnO-5S
• rrnW-16S
• rrnW-23S
• rrnW-5S

rRNA modification and maturation

• ksgA
• mrnC
• rimM
• rlmCD
• rluB
• rnc
• rnmV
• rsmG
• yacO
• ypuI
• yqfG
• ysgA

rRNA modification and maturation/ based on similarity

• yabC
• ylbH
• ylbN
• yloM
• yloN
• ypsC
• yrrK
• ytzG
• yydA

Ribosomal proteins

• ctc
• rplA
• rplB
• rplC
• rplD
• rplE
• rplF
• rplI
• rplJ
• rplK
• rplL
• rplM
• rplN
• rplO
• rplP
• rplQ
• rplR
• rplS
• rplT
• rplU
• rplV
• rplW
• rplX
• rpmA
• rpmB
• rpmC
• rpmD
• rpmE
• rpmF
• rpmGA
• rpmGB
• rpmGC
• rpmH
• rpmI
• rpmJ
• rpsB
• rpsC
• rpsD
• rpsE
• rpsF
• rpsG
• rpsH
• rpsI
• rpsJ
• rpsK
• rpsL
• rpsM
• rpsN
• rpsO
• rpsP
• rpsQ
• rpsR
• rpsS
• rpsT
• rpsU
• ybxF
• rpsNB
• rpmEB

Ribosomal protein/ based on similarity

• yfjL
• ylxQ
• ypfD

Ribosome assembly

• cpgA
• cshA
• cshB
• engA
• era
• obg
• prp
• rbgA
• yaaA
• yfmL
• yqeH
• ysxC

tRNA

• trnA-Ala
• trnA-Ile
• trnB-Ala
• trnB-Arg
• trnB-Asn
• trnB-Asp
• trnB-Glu
• trnB-Gly1
• trnB-Gly2
• trnB-His
• trnB-Ile2
• trnB-Leu1
• trnB-Leu2
• trnB-Lys
• trnB-Met1
• trnB-Met2
• trnB-Met3
• trnB-Phe
• trnB-Pro
• trnB-Ser1
• trnB-Ser2
• trnB-Thr
• trnB-Val
• trnD-Asn
• trnD-Asp
• trnD-Cys
• trnD-Gln
• trnD-Glu
• trnD-Gly
• trnD-His
• trnD-Leu1
• trnD-Leu2
• trnD-Met
• trnD-Phe
• trnD-Ser
• trnD-Thr
• trnD-Trp
• trnD-Tyr
• trnD-Val
• trnE-Arg
• trnE-Asp
• trnE-Gly
• trnE-Met
• trnI-Ala
• trnI-Arg
• trnI-Asn
• trnI-Gly
• trnI-Pro
• trnI-Thr
• trnJ-Ala
• trnJ-Arg
• trnJ-Gly
• trnJ-Leu1
• trnJ-Leu2
• trnJ-Lys
• trnJ-Pro
• trnJ-Thr
• trnJ-Val
• trnO-Ala
• trnO-Ile
• trnQ-Arg
• trnS-Asn
• trnS-Gln
• trnS-Glu
• trnS-Leu1
• trnS-Leu2
• trnS-Lys
• trnS-Ser
• trnSL-Ala1
• trnSL-Arg1
• trnSL-Arg2
• trnSL-Gln1
• trnSL-Gln2
• trnSL-Glu1
• trnSL-Glu2
• trnSL-Gly1
• trnSL-Met1
• trnSL-Ser1
• trnSL-Thr1
• trnSL-Tyr1
• trnSL-Val1
• trnSL-Val2
• trnY-Asp
• trnY-Glu
• trnY-Lys
• trnY-Phe

tRNA modification and maturation

• cca
• cspR
• fmt
• folD
• gidA
• miaA
• nifZ
• queA
• queC
• queD
• queE
• queF
• queG
• rnpA
• rnpB
• rnz
• rph
• tgt
• thdF
• thiI
• tilS
• trmB
• trmD
• trmFO
• trmK
• trmU
• truA
• truB
• tsaB
• tsaC
• tsaD
• tsaE
• yaaJ
• yacF
• yfjN
• ymcB
• yqeV
• yrvM
• yrvO

tRNA modification and maturation/ based on similarity

• yjdI

Aminoacyl-tRNA synthetases

• alaS
• argS
• asnS
• aspS
• cysS
• gatA
• gatB
• gatC
• gltX
• glyQ
• glyS
• hisS
• hisZ
• ileS
• leuS
• lysS
• metS
• pheS
• pheT
• proS
• serS
• thrS
• thrZ
• trpS
• tyrS
• tyrZ
• valS
• ytpR

Translation factors

• efp
• frr
• fusA
• infA
• infB
• infC
• lepA
• prfA
• prfB
• rbfA
• tsf
• tufA
• ylaG

Translation/ other

• deaD
• defA
• dtd
• map
• mifM
• smpB
• spoVC
• ssrA
• yflG
• ynbA
• yqeL
• yqeT

Translation/ other/ based on similarity

• yabO
• ydiD
• yfjO
• yjbO
• yjcK
• ylxS
• ylyB
• ynaD
• yoaA
• yqeI
• ywkE

Important publications

Koichi Yano, Kenta Masuda, Genki Akanuma, Tetsuya Wada, Takashi Matsumoto, Yuh Shiwa, Taichiro Ishige, Hirofumi Yoshikawa, Hironori Niki, Takashi Inaoka, Fujio Kawamura
Growth and sporulation defects in Bacillus subtilis mutants with a single rrn operon can be suppressed by amplification of the rrn operon.
Microbiology (Reading): 2016, 162(1);35-45
[PubMed:26518335] [WorldCat.org] [DOI] (I p)

Jennifer Shepherd, Michael Ibba
Bacterial transfer RNAs.
FEMS Microbiol Rev: 2015, 39(3);280-300
[PubMed:25796611] [WorldCat.org] [DOI] (I p)

Henri Grosjean, Marc Breton, Pascal Sirand-Pugnet, Florence Tardy, François Thiaucourt, Christine Citti, Aurélien Barré, Satoko Yoshizawa, Dominique Fourmy, Valérie de Crécy-Lagard, Alain Blanchard
Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.
PLoS Genet: 2014, 10(5);e1004363
[PubMed:24809820] [WorldCat.org] [DOI] (I e)

Matthew H Larson, Rachel A Mooney, Jason M Peters, Tricia Windgassen, Dhananjaya Nayak, Carol A Gross, Steven M Block, William J Greenleaf, Robert Landick, Jonathan S Weissman
A pause sequence enriched at translation start sites drives transcription dynamics in vivo.
Science: 2014, 344(6187);1042-7
[PubMed:24789973] [WorldCat.org] [DOI] (I p)

Basma El Yacoubi, Marc Bailly, Valérie de Crécy-Lagard
Biosynthesis and function of posttranscriptional modifications of transfer RNAs.
Annu Rev Genet: 2012, 46;69-95
[PubMed:22905870] [WorldCat.org] [DOI] (I p)

Alex Rosenberg, Lior Sinai, Yoav Smith, Sigal Ben-Yehuda
Dynamic expression of the translational machinery during Bacillus subtilis life cycle at a single cell level.
PLoS One: 2012, 7(7);e41921
[PubMed:22848659] [WorldCat.org] [DOI] (I p)

Gene-Wei Li, Eugene Oh, Jonathan S Weissman
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria.
Nature: 2012, 484(7395);538-41
[PubMed:22456704] [WorldCat.org] [DOI] (I e)