Difference between revisions of "Transporters/ other"
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* 1.2.4. [[Transporters/ other]] | * 1.2.4. [[Transporters/ other]] | ||
|Related= | |Related= | ||
| − | [[transport proteins]] | + | * [[transport proteins]] |
| + | * [[APC superfamily of transport proteins]] | ||
|}} | |}} | ||
| + | == Important web site: [http://www.tcdb.org The transporter classification database] == | ||
== Genes in this functional category == | == Genes in this functional category == | ||
| − | ===Amino acid | + | ===Amino acid transporters === |
| + | ==== solute:sodium symporter family ==== | ||
| + | * ''[[gltT]]'' | ||
| + | * ''[[opuE]]'' | ||
| + | * ''[[putP]]'' | ||
| + | * ''[[yodF]]'' | ||
| + | * ''[[ywcA]]'' | ||
| + | ==== Other amino acid transporters ==== | ||
* ''[[aapA]]'' | * ''[[aapA]]'' | ||
* ''[[azlC]]'' | * ''[[azlC]]'' | ||
| Line 24: | Line 33: | ||
* ''[[glnT]]'' | * ''[[glnT]]'' | ||
* ''[[gltP]]'' | * ''[[gltP]]'' | ||
| − | + | ||
* ''[[hutM]]'' | * ''[[hutM]]'' | ||
| − | |||
* ''[[rocC]]'' | * ''[[rocC]]'' | ||
* ''[[rocE]]'' | * ''[[rocE]]'' | ||
| Line 40: | Line 48: | ||
===Peptide transporter=== | ===Peptide transporter=== | ||
| − | * ''[[ | + | * ''[[dtpT]]'' |
===Carbohydrate transporter=== | ===Carbohydrate transporter=== | ||
| Line 65: | Line 73: | ||
* ''[[citH]]'' | * ''[[citH]]'' | ||
* ''[[citM]]'' | * ''[[citM]]'' | ||
| − | |||
* ''[[dctP]]'' | * ''[[dctP]]'' | ||
* ''[[gabP]]'' | * ''[[gabP]]'' | ||
| Line 72: | Line 79: | ||
* ''[[maeN]]'' | * ''[[maeN]]'' | ||
* ''[[mleN]]'' | * ''[[mleN]]'' | ||
| + | * ''[[ybaR]]'' | ||
* ''[[yflS]]'' | * ''[[yflS]]'' | ||
* ''[[yoaB]]'' | * ''[[yoaB]]'' | ||
* ''[[yraO]]'' | * ''[[yraO]]'' | ||
| + | * ''[[ysbA]]'' | ||
===Metal ion transporter=== | ===Metal ion transporter=== | ||
| Line 86: | Line 95: | ||
* ''[[czcD]]'' | * ''[[czcD]]'' | ||
* [[EfeO]]-[[EfeU]] | * [[EfeO]]-[[EfeU]] | ||
| + | * [[KhtT]]-[[KhtU]] | ||
* [[KtrA]]-[[KtrB]] | * [[KtrA]]-[[KtrB]] | ||
* [[KtrC]]-[[KtrD]] | * [[KtrC]]-[[KtrD]] | ||
| Line 99: | Line 109: | ||
* ''[[nhaC]]'' | * ''[[nhaC]]'' | ||
* ''[[nhaK]]'' | * ''[[nhaK]]'' | ||
| + | * ''[[pfeT]]'' | ||
* ''[[yciB]]'' | * ''[[yciB]]'' | ||
* ''[[ycnJ]]'' | * ''[[ycnJ]]'' | ||
* ''[[yfjQ]]'' | * ''[[yfjQ]]'' | ||
| − | * ''[[ | + | * ''[[yugO]]'' |
| − | |||
| − | |||
| − | |||
===Nucleotide/ nucleoside transporter=== | ===Nucleotide/ nucleoside transporter=== | ||
* ''[[nupC]]'' | * ''[[nupC]]'' | ||
| Line 133: | Line 141: | ||
=== Siderophore exporters === | === Siderophore exporters === | ||
* ''[[ymfD]]'' | * ''[[ymfD]]'' | ||
| + | |||
| + | === Metal ion exporters === | ||
| + | * ''[[mneP]]'' | ||
| + | * ''[[mneS]]'' | ||
| + | |||
| + | === Multidrug exporters === | ||
| + | * ''[[ebrA]]'' | ||
| + | * ''[[ebrB]]'' | ||
| + | * ''[[yvaD]]'' | ||
| + | * ''[[yvaE]]'' | ||
| + | * ''[[yvdR]]'' | ||
| + | * ''[[yvdS]]'' | ||
=== Other exporters === | === Other exporters === | ||
* ''[[blt]]'' | * ''[[blt]]'' | ||
* ''[[bmr]]'' | * ''[[bmr]]'' | ||
| − | * ''[[ | + | * ''[[epsK]]'' |
| − | |||
* ''[[mdr]]'' | * ''[[mdr]]'' | ||
* ''[[narK]]'' | * ''[[narK]]'' | ||
* ''[[trkA]]'' | * ''[[trkA]]'' | ||
| + | * ''[[ykkC]]'' | ||
| + | * ''[[ykkD]]'' | ||
* ''[[ywrA]]'' | * ''[[ywrA]]'' | ||
* ''[[ywrB]]'' | * ''[[ywrB]]'' | ||
| Line 156: | Line 177: | ||
* ''[[ycbK]]'' | * ''[[ycbK]]'' | ||
| − | + | ||
* ''[[yceJ]]'' | * ''[[yceJ]]'' | ||
*'' [[ycgH]]'' | *'' [[ycgH]]'' | ||
| Line 166: | Line 187: | ||
* ''[[ydeG]]'' | * ''[[ydeG]]'' | ||
* ''[[ydeR]]'' | * ''[[ydeR]]'' | ||
| − | |||
* ''[[ydgH]]'' | * ''[[ydgH]]'' | ||
* ''[[ydgK]]'' | * ''[[ydgK]]'' | ||
| − | + | ||
* ''[[yecA]]'' | * ''[[yecA]]'' | ||
* ''[[yfhI]]'' | * ''[[yfhI]]'' | ||
| Line 196: | Line 216: | ||
* ''[[yocR]]'' | * ''[[yocR]]'' | ||
* ''[[yocS]]'' | * ''[[yocS]]'' | ||
| − | + | ||
* ''[[yojA]]'' | * ''[[yojA]]'' | ||
* ''[[ypnP]]'' | * ''[[ypnP]]'' | ||
| Line 207: | Line 227: | ||
* ''[[yttB]]'' | * ''[[yttB]]'' | ||
* ''[[yubD]]'' | * ''[[yubD]]'' | ||
| − | + | ||
* ''[[yutK]]'' | * ''[[yutK]]'' | ||
* ''[[yuxJ]]'' | * ''[[yuxJ]]'' | ||
| − | + | ||
* ''[[yvbV]]'' | * ''[[yvbV]]'' | ||
| Line 220: | Line 240: | ||
* ''[[yvqJ]]'' | * ''[[yvqJ]]'' | ||
* ''[[yvsH]]'' | * ''[[yvsH]]'' | ||
| − | |||
* ''[[ywcJ]]'' | * ''[[ywcJ]]'' | ||
* ''[[ywoD]]'' | * ''[[ywoD]]'' | ||
| Line 234: | Line 253: | ||
=Relevant publications= | =Relevant publications= | ||
| − | <pubmed> 20497229 11763970 15247498 10839820 12787345 10943556 9529885</pubmed> | + | <pubmed> 20497229 11763970 15247498 10839820 12787345 10943556 9529885 24225317 </pubmed> |
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 08:56, 22 December 2016
| Parent categories |
|
| Neighbouring categories |
|
| Related categories | |
Contents
- 1 Important web site: The transporter classification database
- 2 Genes in this functional category
- 2.1 Amino acid transporters
- 2.2 Peptide transporter
- 2.3 Carbohydrate transporter
- 2.4 Transporter for organic acids
- 2.5 Metal ion transporter
- 2.6 Nucleotide/ nucleoside transporter
- 2.7 Transporter for cofactors
- 2.8 Uptake of other small ions
- 2.9 Uptake of compatible solutes
- 2.10 Siderophore exporters
- 2.11 Metal ion exporters
- 2.12 Multidrug exporters
- 2.13 Other exporters
- 2.14 Other transporters
- 3 Relevant publications
- 4 Back to categories
Important web site: The transporter classification database
Genes in this functional category
Amino acid transporters
solute:sodium symporter family
Other amino acid transporters
Peptide transporter
Carbohydrate transporter
Transporter for organic acids
Metal ion transporter
- arsB
- aseA
- cadA
- chaA
- copA
- copZ
- corA
- czcD
- EfeO-EfeU
- KhtT-KhtU
- KtrA-KtrB
- KtrC-KtrD
- mgtE
- mntH
- mrpA
- mrpB
- mrpC
- mrpD
- mrpE
- mrpF
- mrpG
- nhaC
- nhaK
- pfeT
- yciB
- ycnJ
- yfjQ
- yugO
Nucleotide/ nucleoside transporter
Transporter for cofactors
Uptake of other small ions
Uptake of compatible solutes
Siderophore exporters
Metal ion exporters
Multidrug exporters
Other exporters
Other transporters
- yecA
- yfhI
- yfiS
- yfiU
- yfkF
- yfkL
- yflA
- yfmI
- yfmO
- yfnA
- yhcA
- yhdH
- yhjB
- yhjO
- yitG
- yitZ
- yjbB
- yjbQ
- ykuC
- yloB
- yncC
- yoaV
- yocN
- yocR
- yocS
Relevant publications
Milton H Saier, Vamsee S Reddy, Dorjee G Tamang, Ake Västermark
The transporter classification database.
Nucleic Acids Res: 2014, 42(Database issue);D251-8
[PubMed:24225317]
[WorldCat.org]
[DOI]
(I p)
Thomas Eitinger, Dmitry A Rodionov, Mathias Grote, Erwin Schneider
Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions.
FEMS Microbiol Rev: 2011, 35(1);3-67
[PubMed:20497229]
[WorldCat.org]
[DOI]
(I p)
Wolfgang Busch, Milton H Saier, International Union of Biochemistry and Molecular Biology (IUBMB)
The IUBMB-endorsed transporter classification system.
Mol Biotechnol: 2004, 27(3);253-62
[PubMed:15247498]
[WorldCat.org]
[DOI]
(P p)
Milton H Saier
Tracing pathways of transport protein evolution.
Mol Microbiol: 2003, 48(5);1145-56
[PubMed:12787345]
[WorldCat.org]
[DOI]
(P p)
Milton H Saier, Seth R Goldman, Randal R Maile, Matthew S Moreno, Walter Weyler, Nelson Yang, Ian T Paulsen
Transport capabilities encoded within the Bacillus subtilis genome.
J Mol Microbiol Biotechnol: 2002, 4(1);37-67
[PubMed:11763970]
[WorldCat.org]
(P p)
M H Saier, J T Beatty, A Goffeau, K T Harley, W H Heijne, S C Huang, D L Jack, P S Jähn, K Lew, J Liu, S S Pao, I T Paulsen, T T Tseng, P S Virk
The major facilitator superfamily.
J Mol Microbiol Biotechnol: 1999, 1(2);257-79
[PubMed:10943556]
[WorldCat.org]
(P p)
M H Saier
A functional-phylogenetic classification system for transmembrane solute transporters.
Microbiol Mol Biol Rev: 2000, 64(2);354-411
[PubMed:10839820]
[WorldCat.org]
[DOI]
(P p)
S S Pao, I T Paulsen, M H Saier
Major facilitator superfamily.
Microbiol Mol Biol Rev: 1998, 62(1);1-34
[PubMed:9529885]
[WorldCat.org]
[DOI]
(P p)
