Difference between revisions of "Transporters/ other"

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* 1.2.4. [[Transporters/ other]]
 
* 1.2.4. [[Transporters/ other]]
 
|Related=
 
|Related=
−
[[transport proteins]]
+
* [[transport proteins]]
 +
* [[APC superfamily of transport proteins]]
 
|}}
 
|}}
  
 +
== Important web site: [http://www.tcdb.org The transporter classification database] ==
 
== Genes in this functional category ==
 
== Genes in this functional category ==
  
−
=== ECF transporter ===
+
===Amino acid transporters ===
−
* ([[YbxA]]-[[YbaE]])-[[YbaF]] (general components)
+
==== solute:sodium symporter family ====
−
* [[RibU]]
+
* ''[[gltT]]''
−
* [[ThiT]]
+
* ''[[opuE]]''
−
* [[YhfU]]
+
* ''[[putP]]''
−
* [[TrpP]]
+
* ''[[yodF]]''
−
 
+
* ''[[ywcA]]''
−
===Amino acid transporter===
+
==== Other amino acid transporters ====
 
* ''[[aapA]]''
 
* ''[[aapA]]''
 
* ''[[azlC]]''
 
* ''[[azlC]]''
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* ''[[glnT]]''
 
* ''[[glnT]]''
 
* ''[[gltP]]''
 
* ''[[gltP]]''
−
* ''[[gltT]]''
+
 
 
* ''[[hutM]]''
 
* ''[[hutM]]''
−
* ''[[putP]]''
 
 
* ''[[rocC]]''
 
* ''[[rocC]]''
 
* ''[[rocE]]''
 
* ''[[rocE]]''
 
* ''[[steT]]''
 
* ''[[steT]]''
 
* ''[[tcyP]]''
 
* ''[[tcyP]]''
−
* ''[[trpP]]'' (part of ECF transporter)
 
 
* ''[[ybgF]]''
 
* ''[[ybgF]]''
 
* ''[[ybxG]]''
 
* ''[[ybxG]]''
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===Peptide transporter===
 
===Peptide transporter===
−
* ''[[yclF]]''
+
* ''[[dtpT]]''
  
 
===Carbohydrate transporter===
 
===Carbohydrate transporter===
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* ''[[citH]]''
 
* ''[[citH]]''
 
* ''[[citM]]''
 
* ''[[citM]]''
−
* ''[[dctB]]''
 
 
* ''[[dctP]]''
 
* ''[[dctP]]''
 
* ''[[gabP]]''
 
* ''[[gabP]]''
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* ''[[maeN]]''
 
* ''[[maeN]]''
 
* ''[[mleN]]''
 
* ''[[mleN]]''
 +
* ''[[ybaR]]''
 
* ''[[yflS]]''
 
* ''[[yflS]]''
 
* ''[[yoaB]]''
 
* ''[[yoaB]]''
 
* ''[[yraO]]''
 
* ''[[yraO]]''
 +
* ''[[ysbA]]''
  
 
===Metal ion transporter===
 
===Metal ion transporter===
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* ''[[czcD]]''
 
* ''[[czcD]]''
 
* [[EfeO]]-[[EfeU]]
 
* [[EfeO]]-[[EfeU]]
 +
* [[KhtT]]-[[KhtU]]
 
* [[KtrA]]-[[KtrB]]
 
* [[KtrA]]-[[KtrB]]
 
* [[KtrC]]-[[KtrD]]
 
* [[KtrC]]-[[KtrD]]
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* ''[[nhaC]]''
 
* ''[[nhaC]]''
 
* ''[[nhaK]]''
 
* ''[[nhaK]]''
 +
* ''[[pfeT]]''
 
* ''[[yciB]]''
 
* ''[[yciB]]''
 
* ''[[ycnJ]]''
 
* ''[[ycnJ]]''
 
* ''[[yfjQ]]''
 
* ''[[yfjQ]]''
−
* ''[[yhaT]]''
+
* ''[[yugO]]''
−
* ''[[yhaU]]''
 
−
* ''[[zosA]]''
 
−
 
 
 
===Nucleotide/ nucleoside transporter===
 
===Nucleotide/ nucleoside transporter===
 
* ''[[nupC]]''
 
* ''[[nupC]]''
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===Transporter for cofactors===
 
===Transporter for cofactors===
 
* ''[[niaP]]''
 
* ''[[niaP]]''
−
* ''[[ribU]]'' (part of ECF transporter)
 
−
* ''[[thiT]]'' (part of ECF transporter)
 
−
* ''[[yhfU]]'' (part of ECF transporter)
 
  
 
=== Uptake of other small ions ===
 
=== Uptake of other small ions ===
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=== Siderophore exporters ===
 
=== Siderophore exporters ===
 
* ''[[ymfD]]''
 
* ''[[ymfD]]''
 +
 +
=== Metal ion exporters ===
 +
* ''[[mneP]]''
 +
* ''[[mneS]]''
 +
 +
=== Multidrug exporters ===
 +
* ''[[ebrA]]''
 +
* ''[[ebrB]]''
 +
* ''[[yvaD]]''
 +
* ''[[yvaE]]''
 +
* ''[[yvdR]]''
 +
* ''[[yvdS]]''
  
 
=== Other exporters ===
 
=== Other exporters ===
 
* ''[[blt]]''
 
* ''[[blt]]''
 
* ''[[bmr]]''
 
* ''[[bmr]]''
−
* ''[[ebrA]]''
+
* ''[[epsK]]''
−
* ''[[ebrB]]''
 
 
* ''[[mdr]]''
 
* ''[[mdr]]''
 
* ''[[narK]]''
 
* ''[[narK]]''
 
* ''[[trkA]]''
 
* ''[[trkA]]''
 +
* ''[[ykkC]]''
 +
* ''[[ykkD]]''
 
* ''[[ywrA]]''
 
* ''[[ywrA]]''
 
* ''[[ywrB]]''
 
* ''[[ywrB]]''
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* ''[[ycbK]]''
 
* ''[[ycbK]]''
−
* ''[[yccK]]''
+
 
 
* ''[[yceJ]]''
 
* ''[[yceJ]]''
 
*'' [[ycgH]]''
 
*'' [[ycgH]]''
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* ''[[ydeG]]''
 
* ''[[ydeG]]''
 
* ''[[ydeR]]''
 
* ''[[ydeR]]''
−
* ''[[ydfM]]''
 
  
 
* ''[[ydgH]]''
 
* ''[[ydgH]]''
 
* ''[[ydgK]]''
 
* ''[[ydgK]]''
−
* ''[[yeaB]]''
+
 
 
* ''[[yecA]]''
 
* ''[[yecA]]''
 
* ''[[yfhI]]''
 
* ''[[yfhI]]''
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* ''[[yocR]]''
 
* ''[[yocR]]''
 
* ''[[yocS]]''
 
* ''[[yocS]]''
−
* ''[[yodF]]''
+
 
 
* ''[[yojA]]''
 
* ''[[yojA]]''
 
* ''[[ypnP]]''
 
* ''[[ypnP]]''
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* ''[[yttB]]''
 
* ''[[yttB]]''
 
* ''[[yubD]]''
 
* ''[[yubD]]''
−
* ''[[yugO]]''
+
 
 
* ''[[yutK]]''
 
* ''[[yutK]]''
 
* ''[[yuxJ]]''
 
* ''[[yuxJ]]''
−
* ''[[yvaE]]''
+
 
 
* ''[[yvbV]]''
 
* ''[[yvbV]]''
  
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* ''[[yvqJ]]''
 
* ''[[yvqJ]]''
 
* ''[[yvsH]]''
 
* ''[[yvsH]]''
−
* ''[[ywcA]]''
 
 
* ''[[ywcJ]]''
 
* ''[[ywcJ]]''
 
* ''[[ywoD]]''
 
* ''[[ywoD]]''
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=Relevant publications=
 
=Relevant publications=
−
<pubmed> 20497229 11763970 15247498 10839820 12787345 10943556 9529885</pubmed>
+
<pubmed> 20497229 11763970 15247498 10839820 12787345 10943556 9529885 24225317 </pubmed>
  
 
=Back to [[categories]]=
 
=Back to [[categories]]=

Latest revision as of 08:56, 22 December 2016

Parent categories
Neighbouring categories
Related categories

Important web site: The transporter classification database

Genes in this functional category

Amino acid transporters

solute:sodium symporter family

Other amino acid transporters

Peptide transporter

Carbohydrate transporter

Transporter for organic acids

Metal ion transporter

Nucleotide/ nucleoside transporter

Transporter for cofactors

Uptake of other small ions

Uptake of compatible solutes

Siderophore exporters

Metal ion exporters

Multidrug exporters

Other exporters

Other transporters

Relevant publications

Milton H Saier, Vamsee S Reddy, Dorjee G Tamang, Ake Västermark
The transporter classification database.
Nucleic Acids Res: 2014, 42(Database issue);D251-8
[PubMed:24225317] [WorldCat.org] [DOI] (I p)

Thomas Eitinger, Dmitry A Rodionov, Mathias Grote, Erwin Schneider
Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions.
FEMS Microbiol Rev: 2011, 35(1);3-67
[PubMed:20497229] [WorldCat.org] [DOI] (I p)

Wolfgang Busch, Milton H Saier, International Union of Biochemistry and Molecular Biology (IUBMB)
The IUBMB-endorsed transporter classification system.
Mol Biotechnol: 2004, 27(3);253-62
[PubMed:15247498] [WorldCat.org] [DOI] (P p)

Milton H Saier
Tracing pathways of transport protein evolution.
Mol Microbiol: 2003, 48(5);1145-56
[PubMed:12787345] [WorldCat.org] [DOI] (P p)

Milton H Saier, Seth R Goldman, Randal R Maile, Matthew S Moreno, Walter Weyler, Nelson Yang, Ian T Paulsen
Transport capabilities encoded within the Bacillus subtilis genome.
J Mol Microbiol Biotechnol: 2002, 4(1);37-67
[PubMed:11763970] [WorldCat.org] (P p)

M H Saier, J T Beatty, A Goffeau, K T Harley, W H Heijne, S C Huang, D L Jack, P S Jähn, K Lew, J Liu, S S Pao, I T Paulsen, T T Tseng, P S Virk
The major facilitator superfamily.
J Mol Microbiol Biotechnol: 1999, 1(2);257-79
[PubMed:10943556] [WorldCat.org] (P p)

M H Saier
A functional-phylogenetic classification system for transmembrane solute transporters.
Microbiol Mol Biol Rev: 2000, 64(2);354-411
[PubMed:10839820] [WorldCat.org] [DOI] (P p)

S S Pao, I T Paulsen, M H Saier
Major facilitator superfamily.
Microbiol Mol Biol Rev: 1998, 62(1);1-34
[PubMed:9529885] [WorldCat.org] [DOI] (P p)


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