Difference between revisions of "Translation"
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=Back to [[categories]]= | =Back to [[categories]]= | ||
Revision as of 12:17, 6 November 2015
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Contents
- 1 Genes in this functional category
- 1.1 Ribosomal RNA
- 1.2 rRNA modification and maturation
- 1.3 rRNA modification and maturation/ based on similarity
- 1.4 Ribosomal proteins
- 1.5 Ribosomal protein/ based on similarity
- 1.6 Ribosome assembly
- 1.7 tRNA
- 1.8 tRNA modification and maturation
- 1.9 tRNA modification and maturation/ based on similarity
- 1.10 Aminoacyl-tRNA synthetases
- 1.11 Translation factors
- 1.12 Translation/ other
- 1.13 Translation/ other/ based on similarity
- 2 Important publications
- 3 Back to categories
Genes in this functional category
Ribosomal RNA
- rrnA-16S
- rrnA-23S
- rrnA-5S
- rrnB-16S
- rrnB-23S
- rrnB-5S
- rrnD-16S
- rrnD-23S
- rrnD-5S
- rrnE-16S
- rrnE-23S
- rrnE-5S
- rrnG-16S
- rrnG-23S
- rrnG-5S
- rrnH-16S
- rrnH-23S
- rrnH-5S
- rrnI-16S
- rrnI-23S
- rrnI-5S
- rrnJ-16S
- rrnJ-23S
- rrnJ-5S
- rrnO-16S
- rrnO-23S
- rrnO-5S
- rrnW-16S
- rrnW-23S
- rrnW-5S
rRNA modification and maturation
rRNA modification and maturation/ based on similarity
Ribosomal proteins
- ctc
- rplA
- rplB
- rplC
- rplD
- rplE
- rplF
- rplI
- rplJ
- rplK
- rplL
- rplM
- rplN
- rplO
- rplP
- rplQ
- rplR
- rplS
- rplT
- rplU
- rplV
- rplW
- rplX
- rpmA
- rpmB
- rpmC
- rpmD
- rpmE
- rpmF
- rpmGA
- rpmGB
- rpmGC
- rpmH
- rpmI
- rpmJ
- rpsB
- rpsC
- rpsD
- rpsE
- rpsF
- rpsG
- rpsH
- rpsI
- rpsJ
- rpsK
- rpsL
- rpsM
- rpsN
- rpsO
- rpsP
- rpsQ
- rpsR
- rpsS
- rpsT
- rpsU
- ybxF
- yhzA
- ytiA
Ribosomal protein/ based on similarity
Ribosome assembly
tRNA
- trnA-Ala
- trnA-Ile
- trnB-Ala
- trnB-Arg
- trnB-Asn
- trnB-Asp
- trnB-Glu
- trnB-Gly1
- trnB-Gly2
- trnB-His
- trnB-Ile2
- trnB-Leu1
- trnB-Leu2
- trnB-Lys
- trnB-Met1
- trnB-Met2
- trnB-Met3
- trnB-Phe
- trnB-Pro
- trnB-Ser1
- trnB-Ser2
- trnB-Thr
- trnB-Val
- trnD-Asn
- trnD-Asp
- trnD-Cys
- trnD-Gln
- trnD-Glu
- trnD-Gly
- trnD-His
- trnD-Leu1
- trnD-Leu2
- trnD-Met
- trnD-Phe
- trnD-Ser
- trnD-Thr
- trnD-Trp
- trnD-Tyr
- trnD-Val
- trnE-Arg
- trnE-Asp
- trnE-Gly
- trnE-Met
- trnI-Ala
- trnI-Arg
- trnI-Asn
- trnI-Gly
- trnI-Pro
- trnI-Thr
- trnJ-Ala
- trnJ-Arg
- trnJ-Gly
- trnJ-Leu1
- trnJ-Leu2
- trnJ-Lys
- trnJ-Pro
- trnJ-Thr
- trnJ-Val
- trnO-Ala
- trnO-Ile
- trnQ-Arg
- trnS-Asn
- trnS-Gln
- trnS-Glu
- trnS-Leu1
- trnS-Leu2
- trnS-Lys
- trnS-Ser
- trnSL-Ala1
- trnSL-Arg1
- trnSL-Arg2
- trnSL-Gln1
- trnSL-Gln2
- trnSL-Glu1
- trnSL-Glu2
- trnSL-Gly1
- trnSL-Met1
- trnSL-Ser1
- trnSL-Thr1
- trnSL-Tyr1
- trnSL-Val1
- trnSL-Val2
- trnY-Asp
- trnY-Glu
- trnY-Lys
- trnY-Phe
tRNA modification and maturation
- cca
- cspR
- fmt
- folD
- gidA
- miaA
- nifZ
- queA
- queC
- queD
- queE
- queF
- queG
- rnpA
- rnpB
- rnz
- rph
- tgt
- thdF
- thiI
- tilS
- trmB
- trmD
- trmFO
- trmK
- trmU
- truA
- truB
- tsaB
- tsaC
- tsaD
- tsaE
- yaaJ
- yacF
- yfjN
- ymcB
- yqeV
- yrvM
- yrvO
tRNA modification and maturation/ based on similarity
Aminoacyl-tRNA synthetases
- alaS
- argS
- asnS
- aspS
- cysS
- gatA
- gatB
- gatC
- gltX
- glyQ
- glyS
- hisS
- hisZ
- ileS
- leuS
- lysS
- metS
- pheS
- pheT
- proS
- serS
- thrS
- thrZ
- trpS
- tyrS
- tyrZ
- valS
- ytpR
Discussion of the structure of aminoacyl-tRNA synthetases
Translation factors
Translation/ other
Translation/ other/ based on similarity
Important publications
Koichi Yano, Kenta Masuda, Genki Akanuma, Tetsuya Wada, Takashi Matsumoto, Yuh Shiwa, Taichiro Ishige, Hirofumi Yoshikawa, Hironori Niki, Takashi Inaoka, Fujio Kawamura
Growth and sporulation defects in Bacillus subtilis mutants with a single rrn operon can be suppressed by amplification of the rrn operon.
Microbiology (Reading): 2016, 162(1);35-45
[PubMed:26518335]
[WorldCat.org]
[DOI]
(I p)
Jennifer Shepherd, Michael Ibba
Bacterial transfer RNAs.
FEMS Microbiol Rev: 2015, 39(3);280-300
[PubMed:25796611]
[WorldCat.org]
[DOI]
(I p)
Henri Grosjean, Marc Breton, Pascal Sirand-Pugnet, Florence Tardy, François Thiaucourt, Christine Citti, Aurélien Barré, Satoko Yoshizawa, Dominique Fourmy, Valérie de Crécy-Lagard, Alain Blanchard
Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.
PLoS Genet: 2014, 10(5);e1004363
[PubMed:24809820]
[WorldCat.org]
[DOI]
(I e)
Matthew H Larson, Rachel A Mooney, Jason M Peters, Tricia Windgassen, Dhananjaya Nayak, Carol A Gross, Steven M Block, William J Greenleaf, Robert Landick, Jonathan S Weissman
A pause sequence enriched at translation start sites drives transcription dynamics in vivo.
Science: 2014, 344(6187);1042-7
[PubMed:24789973]
[WorldCat.org]
[DOI]
(I p)
Basma El Yacoubi, Marc Bailly, Valérie de Crécy-Lagard
Biosynthesis and function of posttranscriptional modifications of transfer RNAs.
Annu Rev Genet: 2012, 46;69-95
[PubMed:22905870]
[WorldCat.org]
[DOI]
(I p)
Alex Rosenberg, Lior Sinai, Yoav Smith, Sigal Ben-Yehuda
Dynamic expression of the translational machinery during Bacillus subtilis life cycle at a single cell level.
PLoS One: 2012, 7(7);e41921
[PubMed:22848659]
[WorldCat.org]
[DOI]
(I p)
Gene-Wei Li, Eugene Oh, Jonathan S Weissman
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria.
Nature: 2012, 484(7395);538-41
[PubMed:22456704]
[WorldCat.org]
[DOI]
(I e)
