Difference between revisions of "Genetic competence"
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|Neighbours= | |Neighbours= | ||
* 4.1.1. [[Motility and chemotaxis]] | * 4.1.1. [[Motility and chemotaxis]] | ||
| − | * 4.1.2. [[Biofilm formation]] | + | * 4.1.2. [[Swarming]] |
| − | * 4.1. | + | * 4.1.3. [[Sliding]] |
| + | * 4.1.4. [[Biofilm formation]] | ||
| + | * 4.1.5. [[Genetic competence]] | ||
|Related= | |Related= | ||
| + | * [[DNA repair/ recombination]] | ||
* {{SubtiWiki regulon|[[ComA regulon]]}} | * {{SubtiWiki regulon|[[ComA regulon]]}} | ||
* {{SubtiWiki regulon|[[ComK regulon]]}} | * {{SubtiWiki regulon|[[ComK regulon]]}} | ||
| Line 23: | Line 26: | ||
* 3.1.6. [[Genetics/ other]] | * 3.1.6. [[Genetics/ other]] | ||
|Related= | |Related= | ||
| + | * [[DNA repair/ recombination]] | ||
* {{SubtiWiki regulon|[[ComA regulon]]}} | * {{SubtiWiki regulon|[[ComA regulon]]}} | ||
* {{SubtiWiki regulon|[[ComK regulon]]}} | * {{SubtiWiki regulon|[[ComK regulon]]}} | ||
|}} | |}} | ||
__TOC__ | __TOC__ | ||
| − | <br><br><br><br><br> | + | <br><br><br><br><br> |
| + | |||
| + | * The wild type strain NCIB3610 is only poorly competent because the small protein ComI encoded on the endogenous plasmid pBS32 inhibits the competence DNA uptake machinery. {{PubMed|23836866}} | ||
==Labs working on genetic competence== | ==Labs working on genetic competence== | ||
* [[David Dubnau]] | * [[David Dubnau]] | ||
| + | * [[Oscar Kuipers]] | ||
== Genes in this functional category == | == Genes in this functional category == | ||
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* ''[[comZ]]'' | * ''[[comZ]]'' | ||
* ''[[dprA]]'' | * ''[[dprA]]'' | ||
| + | * ''[[kre]]'' | ||
| + | * ''[[maf]]'' | ||
* ''[[mecA]]'' | * ''[[mecA]]'' | ||
* ''[[med]]'' | * ''[[med]]'' | ||
| Line 84: | Line 93: | ||
* ''[[sbcC]]'' | * ''[[sbcC]]'' | ||
* ''[[sbcD]]'' | * ''[[sbcD]]'' | ||
| + | * ''[[ssbB]]'' | ||
| + | * ''[[yidC2]]'' | ||
* ''[[yvcJ]]'' | * ''[[yvcJ]]'' | ||
| + | |||
| + | ==Important original publications== | ||
| + | <pubmed> 23836866 24012503 27003682 27375604</pubmed> | ||
| + | |||
==Important reviews== | ==Important reviews== | ||
| − | + | <pubmed>15083159 19228200 10607621 9224890 1943994 19995980 12576575 23046409 22146301 23551850 23572583 23693123 23669271 25547840 </pubmed> | |
| − | <pubmed>15083159 19228200 10607621 9224890 1943994 19995980 12576575 23046409</pubmed> | ||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 10:38, 15 July 2016
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Contents
- The wild type strain NCIB3610 is only poorly competent because the small protein ComI encoded on the endogenous plasmid pBS32 inhibits the competence DNA uptake machinery. PubMed
Labs working on genetic competence
Genes in this functional category
- addA
- addB
- bdbC
- bdbD
- coiA
- comA
- comC
- comEA
- comEB
- comEC
- comER
- comFA
- comFB
- comFC
- comGA
- comGB
- comGC
- comGD
- comGE
- comGF
- comGG
- comK
- comN
- comP
- comQ
- comS
- comX
- comZ
- dprA
- kre
- maf
- mecA
- med
- nin
- nucA
- oppA
- oppB
- oppC
- oppD
- oppF
- phrC
- phrF
- phrK
- pnpA
- radC
- rapC
- rapD
- rapF
- rapK
- recA
- rok
- sbcC
- sbcD
- ssbB
- yidC2
- yvcJ
Important original publications
Melih Yüksel, Jeffrey J Power, Jan Ribbe, Thorsten Volkmann, Berenike Maier
Fitness Trade-Offs in Competence Differentiation of Bacillus subtilis.
Front Microbiol: 2016, 7;888
[PubMed:27375604]
[WorldCat.org]
[DOI]
(P e)
Andrew Mugler, Mark Kittisopikul, Luke Hayden, Jintao Liu, Chris H Wiggins, Gürol M Süel, Aleksandra M Walczak
Noise Expands the Response Range of the Bacillus subtilis Competence Circuit.
PLoS Comput Biol: 2016, 12(3);e1004793
[PubMed:27003682]
[WorldCat.org]
[DOI]
(I e)
Hongguang Xi, Zhuoqin Yang, Marc Turcotte
Subtle interplay of stochasticity and deterministic dynamics pervades an evolutionary plausible genetic circuit for Bacillus subtilis competence.
Math Biosci: 2013, 246(1);148-63
[PubMed:24012503]
[WorldCat.org]
[DOI]
(I p)
Melissa A Konkol, Kris M Blair, Daniel B Kearns
Plasmid-encoded ComI inhibits competence in the ancestral 3610 strain of Bacillus subtilis.
J Bacteriol: 2013, 195(18);4085-93
[PubMed:23836866]
[WorldCat.org]
[DOI]
(I p)
Important reviews
Mareike Jakobs, Friedhelm Meinhardt
What renders Bacilli genetically competent? A gaze beyond the model organism.
Appl Microbiol Biotechnol: 2015, 99(4);1557-70
[PubMed:25547840]
[WorldCat.org]
[DOI]
(I p)
Hongguang Xi, Lixia Duan, Marc Turcotte
Point-cycle bistability and stochasticity in a regulatory circuit for Bacillus subtilis competence.
Math Biosci: 2013, 244(2);135-47
[PubMed:23693123]
[WorldCat.org]
[DOI]
(I p)
Mainak Pal, Amit Kumar Pal, Sayantari Ghosh, Indrani Bose
Early signatures of regime shifts in gene expression dynamics.
Phys Biol: 2013, 10(3);036010
[PubMed:23669271]
[WorldCat.org]
[DOI]
(I p)
Lorena Espinar, Marta Dies, Tolga Cagatay, Gürol M Süel, Jordi Garcia-Ojalvo
Circuit-level input integration in bacterial gene regulation.
Proc Natl Acad Sci U S A: 2013, 110(17);7091-6
[PubMed:23572583]
[WorldCat.org]
[DOI]
(I p)
Suzy M Stiegelmeyer, Morgan C Giddings
Agent-based modeling of competence phenotype switching in Bacillus subtilis.
Theor Biol Med Model: 2013, 10;23
[PubMed:23551850]
[WorldCat.org]
[DOI]
(I e)
Dawit Kidane, Silvia Ayora, Joann B Sweasy, Peter L Graumann, Juan C Alonso
The cell pole: the site of cross talk between the DNA uptake and genetic recombination machinery.
Crit Rev Biochem Mol Biol: 2012, 47(6);531-55
[PubMed:23046409]
[WorldCat.org]
[DOI]
(I p)
Anna Kuchina, Lorena Espinar, Tolga Çağatay, Alejandro O Balbin, Fang Zhang, Alma Alvarado, Jordi Garcia-Ojalvo, Gürol M Süel
Temporal competition between differentiation programs determines cell fate choice.
Mol Syst Biol: 2011, 7;557
[PubMed:22146301]
[WorldCat.org]
[DOI]
(I e)
Daniel Schultz, Peter G Wolynes, Eshel Ben Jacob, José N Onuchic
Deciding fate in adverse times: sporulation and competence in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2009, 106(50);21027-34
[PubMed:19995980]
[WorldCat.org]
[DOI]
(I p)
Jean-Pierre Claverys, Bernard Martin, Patrice Polard
The genetic transformation machinery: composition, localization, and mechanism.
FEMS Microbiol Rev: 2009, 33(3);643-56
[PubMed:19228200]
[WorldCat.org]
[DOI]
(I p)
Inês Chen, David Dubnau
DNA uptake during bacterial transformation.
Nat Rev Microbiol: 2004, 2(3);241-9
[PubMed:15083159]
[WorldCat.org]
[DOI]
(P p)
Leendert W Hamoen, Gerard Venema, Oscar P Kuipers
Controlling competence in Bacillus subtilis: shared use of regulators.
Microbiology (Reading): 2003, 149(Pt 1);9-17
[PubMed:12576575]
[WorldCat.org]
[DOI]
(P p)
P Tortosa, D Dubnau
Competence for transformation: a matter of taste.
Curr Opin Microbiol: 1999, 2(6);588-92
[PubMed:10607621]
[WorldCat.org]
[DOI]
(P p)
D Dubnau
Binding and transport of transforming DNA by Bacillus subtilis: the role of type-IV pilin-like proteins--a review.
Gene: 1997, 192(1);191-8
[PubMed:9224890]
[WorldCat.org]
[DOI]
(P p)
D Dubnau
Genetic competence in Bacillus subtilis.
Microbiol Rev: 1991, 55(3);395-424
[PubMed:1943994]
[WorldCat.org]
[DOI]
(P p)
