Difference between revisions of "BslA"
Line 1: | Line 1: | ||
− | * '''Description:''' | + | * '''Description:''' amphiphilic protein, forms water-repellent surface layer of the biofilm<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || biofilm surface layer |
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || [[biofilm formation]] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 9.987 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 9.987 | ||
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===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
* reduced colony complexity {{PubMed|21742882}} | * reduced colony complexity {{PubMed|21742882}} | ||
+ | * loss of surface repellency of the biofilm {{PubMed|22571672}} | ||
=== Database entries === | === Database entries === | ||
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* '''Protein family:''' | * '''Protein family:''' | ||
− | * '''Paralogous protein(s):''' | + | * '''Paralogous protein(s):''' [[YweA]] |
=== Extended information on the protein === | === Extended information on the protein === | ||
Line 89: | Line 90: | ||
* '''Localization:''' | * '''Localization:''' | ||
** extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed] | ** extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed] | ||
− | ** | + | ** biofilm matrix in an extracellular polysaccharide-dependent manner {{PubMed|22571672}} |
+ | ** forms a layer on the biofilm surface {{PubMed|22571672}} | ||
=== Database entries === | === Database entries === | ||
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=Expression and regulation= | =Expression and regulation= | ||
− | * '''Operon:''' | + | * '''Operon:''' ''[[bslA]]'' {{PubMed|22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yuaB_3187503_3188048_1 yuaB] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yuaB_3187503_3188048_1 yuaB] {{PubMed|22383849}} | ||
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=References= | =References= | ||
− | <pubmed> 18978066 18957862, 17850253 21097620 21742882 </pubmed> | + | <pubmed> 18978066 18957862, 17850253 21097620 21742882 22383849 22571672 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] |
Revision as of 10:26, 11 May 2012
- Description: amphiphilic protein, forms water-repellent surface layer of the biofilm
Gene name | yuaB |
Synonyms | |
Essential | no |
Product | biofilm surface layer |
Function | biofilm formation |
MW, pI | 19 kDa, 9.987 |
Gene length, protein length | 543 bp, 181 aa |
Immediate neighbours | gbsR, ktrA |
Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU31080
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): YweA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P71014
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References