Difference between revisions of "Pel"
| Line 35: | Line 35: | ||
=== Basic information === | === Basic information === | ||
| − | * '''Locus tag:''' | + | * '''Locus tag:''' BSU07560 |
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| Line 80: | Line 80: | ||
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P39116 P39116] | * '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P39116 P39116] | ||
| − | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+ | + | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU07560] |
* '''E.C. number:''' [http://www.expasy.org/enzyme/4.2.2.2 4.2.2.2] | * '''E.C. number:''' [http://www.expasy.org/enzyme/4.2.2.2 4.2.2.2] | ||
Revision as of 09:50, 3 June 2009
- Description: pectate lyase C
| Gene name | pel |
| Synonyms | |
| Essential | no |
| Product | pectate lyase C |
| Function | degradation of polygalacturonic acid |
| MW, pI | 45 kDa, 8.421 |
| Gene length, protein length | 1260 bp, 420 aa |
| Immediate neighbours | yflT, yflS |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU07560
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends (according to Swiss-Prot)
- Protein family: polysaccharide lyase 1 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: secreted (according to Swiss-Prot), extracellular (signal peptide) PubMed
Database entries
- Swiss prot entry: P39116
- KEGG entry: [3]
- E.C. number: 4.2.2.2
Additional information
Expression and regulation
- Operon:
- Regulatory mechanism: CcpA: transcription repression
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
- Voigt et al. (2009) Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis. J Mol Microbiol Biotechnol. 16: 53-68 PubMed
- Blencke et al. (2003) Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways. Metab Eng. 5: 133-149 PubMed
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
