Difference between revisions of "Biosynthesis of cofactors"
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* 2.6.6. [[Miscellaneous metabolic pathways]] | * 2.6.6. [[Miscellaneous metabolic pathways]] | ||
|Related= | |Related= | ||
| − | + | * [[BirA regulon]] | |
| + | * [[FMN-box]] | ||
| + | * [[NadR regulon]] | ||
| + | * [[Thi-box]] | ||
|}} | |}} | ||
| + | |||
| + | == Genes in this functional category == | ||
| + | |||
| + | === Biosynthesis/ acquisition of biotin === | ||
| + | * [[bioA]] | ||
| + | * [[bioB]] | ||
| + | * [[bioD]] | ||
| + | * [[bioF]] | ||
| + | * [[bioI]] | ||
| + | * [[bioW]] | ||
| + | * [[birA]] | ||
| + | * [[yhfU]] | ||
| + | |||
| + | === Biosynthesis/ acquisition of riboflavin/ fad === | ||
| + | * ''[[ribA]]'' | ||
| + | * ''[[ribC]]'' | ||
| + | * ''[[ribD]]'' | ||
| + | * ''[[ribE]]'' | ||
| + | * ''[[ribH]]'' | ||
| + | * ''[[ribR]]'' | ||
| + | * ''[[ribT]]'' | ||
| + | * ''[[ribU]]'' | ||
| + | * ''[[ycsE]]'' | ||
| + | |||
| + | === Biosynthesis/ acquisition of thiamine === | ||
| + | * [[dxs]] | ||
| + | * [[tenA]] | ||
| + | * [[tenI]] | ||
| + | * [[thiC]] | ||
| + | * [[thiD]] | ||
| + | * [[thiE]] | ||
| + | * [[thiF]] | ||
| + | * [[thiG]] | ||
| + | * [[thiL]] | ||
| + | * [[thiM]] | ||
| + | * [[thiO]] | ||
| + | * [[thiS]] | ||
| + | * [[thiT]] | ||
| + | * [[thiU]] | ||
| + | * [[thiV]] | ||
| + | * [[thiW]] | ||
| + | * [[thiX]] | ||
| + | * [[ylmB]] | ||
| + | * [[yloS]] | ||
| + | |||
| + | === Biosynthesis of coenzyme a === | ||
| + | * [[coaA]] | ||
| + | * [[coaX]] | ||
| + | * [[panB]] | ||
| + | * [[panC]] | ||
| + | * [[panD]] | ||
| + | * [[ylbQ]] | ||
| + | * [[yloI]] | ||
| + | * [[ytaG]] | ||
| + | |||
| + | === Biosynthesis of folate === | ||
| + | * [[dfrA]] | ||
| + | * [[folB]] | ||
| + | * [[folC]] | ||
| + | * [[folE]] | ||
| + | * [[folE2]] | ||
| + | * [[folK]] | ||
| + | * [[pabA]] | ||
| + | * [[pabB]] | ||
| + | * [[pabC]] | ||
| + | * [[sul]] | ||
| + | |||
| + | === Biosynthesis of heme/ siroheme === | ||
| + | * [[ctaA]] | ||
| + | * [[ctaB]] | ||
| + | * [[ctaO]] | ||
| + | * [[gsaB]] | ||
| + | * [[hemA]] | ||
| + | * [[hemB]] | ||
| + | * [[hemC]] | ||
| + | * [[hemD]] | ||
| + | * [[hemE]] | ||
| + | * [[hemH]] | ||
| + | * [[hemL]] | ||
| + | * [[hemN]] | ||
| + | * [[hemQ]] | ||
| + | * [[hemX]] | ||
| + | * [[hemY]] | ||
| + | * [[hemZ]] | ||
| + | * [[ylnD]] | ||
| + | * [[ylnE]] | ||
| + | * [[ylnF]] | ||
| + | |||
| + | === Biosynthesis of lipoic acid (For complete biosynthetic pathway see {{PubMed|21338421}}) === | ||
| + | * [[lipA]] | ||
| + | * [[lipM]] | ||
| + | * [[lplJ]] | ||
| + | * [[lipL]] | ||
| + | * [[gcvH]] | ||
| + | |||
| + | === Biosynthesis of menaquinone === | ||
| + | * [[hepS]] | ||
| + | * [[hepT]] | ||
| + | * [[menA]] | ||
| + | * [[menB]] | ||
| + | * [[menC]] | ||
| + | * [[menD]] | ||
| + | * [[menE]] | ||
| + | * [[menF]] | ||
| + | * [[menH]] | ||
| + | |||
| + | === Biosynthesis of menaquinone/ based on similarity === | ||
| + | * [[ytxM]] | ||
| + | |||
| + | === Biosynthesis of molybdopterin === | ||
| + | * [[moaA]] | ||
| + | * [[moaB]] | ||
| + | * [[moaD]] | ||
| + | * [[moaE]] | ||
| + | * [[mobA]] | ||
| + | * [[mobB]] | ||
| + | * [[moeA]] | ||
| + | * [[moeB]] | ||
| + | * [[ydiG]] | ||
| + | |||
| + | === Biosynthesis of nad(p) === | ||
| + | * ''[[nadA]]'' | ||
| + | * ''[[nadB]]'' | ||
| + | * ''[[nadC]]'' | ||
| + | * ''[[nadD]]'' | ||
| + | * ''[[nadE]]'' | ||
| + | * ''[[nadF]]'' | ||
| + | * ''[[nadR]]'' | ||
| + | * ''[[niaP]]'' | ||
| + | * ''[[nifS]]'' | ||
| + | * ''[[ytdI]]'' | ||
| + | |||
| + | === Biosynthesis of pyridoxal phosphate === | ||
| + | * [[pdxK]] | ||
| + | * [[pdxS]] | ||
| + | * [[pdxT]] | ||
| + | |||
| + | == Metabolism of cofactors in [http://subtiwiki.uni-goettingen.de/subtipathways.html ''Subti''Pathways]== | ||
| + | |||
| + | * [http://subtiwiki.uni-goettingen.de/pathways/CoA_synthesis.html CoA synthesis] | ||
| + | |||
| + | * [http://subtiwiki.uni-goettingen.de/pathways/folate_biosynthesis.html Folate biosynthesis] | ||
| + | |||
| + | * [http://subtiwiki.uni-goettingen.de/pathways/menaquinone.html Menaquinone] | ||
| + | |||
| + | * [http://subtiwiki.uni-goettingen.de/pathways/riboflavin.html Riboflavin and FAD synthesis] | ||
| + | |||
| + | * [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] | ||
| + | |||
| + | * [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] | ||
| + | |||
| + | ==Important original publications== | ||
| + | <pubmed> 24972371 28196402</pubmed> | ||
| + | |||
| + | ==Important reviews== | ||
| + | <pubmed> 11153271 22616866 19348578 18314013 14675553 10382260 24442413 21646432,21437340 26758294 27074917 27890703</pubmed> | ||
| + | |||
| + | =Back to [[categories]]= | ||
Latest revision as of 16:58, 15 February 2017
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Contents
- 1 Genes in this functional category
- 1.1 Biosynthesis/ acquisition of biotin
- 1.2 Biosynthesis/ acquisition of riboflavin/ fad
- 1.3 Biosynthesis/ acquisition of thiamine
- 1.4 Biosynthesis of coenzyme a
- 1.5 Biosynthesis of folate
- 1.6 Biosynthesis of heme/ siroheme
- 1.7 Biosynthesis of lipoic acid (For complete biosynthetic pathway see PubMed)
- 1.8 Biosynthesis of menaquinone
- 1.9 Biosynthesis of menaquinone/ based on similarity
- 1.10 Biosynthesis of molybdopterin
- 1.11 Biosynthesis of nad(p)
- 1.12 Biosynthesis of pyridoxal phosphate
- 2 Metabolism of cofactors in SubtiPathways
- 3 Important original publications
- 4 Important reviews
- 5 Back to categories
Genes in this functional category
Biosynthesis/ acquisition of biotin
Biosynthesis/ acquisition of riboflavin/ fad
Biosynthesis/ acquisition of thiamine
Biosynthesis of coenzyme a
Biosynthesis of folate
Biosynthesis of heme/ siroheme
Biosynthesis of lipoic acid (For complete biosynthetic pathway see PubMed)
Biosynthesis of menaquinone
Biosynthesis of menaquinone/ based on similarity
Biosynthesis of molybdopterin
Biosynthesis of nad(p)
Biosynthesis of pyridoxal phosphate
Metabolism of cofactors in SubtiPathways
Important original publications
Important reviews
