Difference between revisions of "CodY regulon"
(→Repression) |
|||
| (15 intermediate revisions by the same user not shown) | |||
| Line 12: | Line 12: | ||
* ''[[metP]]'' | * ''[[metP]]'' | ||
* ''[[metQ]]'' | * ''[[metQ]]'' | ||
| + | * ''[[pksC]]-[[pksD]]-[[pksE]]-[[acpK]]-[[pksF]]-[[pksG]]-[[pksH]]-[[pksI]]-[[pksJ]]-[[pksL]]-[[pksM]]-[[pksN]]-[[pksR]]'' | ||
=== Repression === | === Repression === | ||
* ''[[acsA]]'' | * ''[[acsA]]'' | ||
| + | * ''[[amhX]]'' | ||
* ''[[ansZ]]'' | * ''[[ansZ]]'' | ||
* ''[[appA/1]]'' | * ''[[appA/1]]'' | ||
| Line 22: | Line 24: | ||
* ''[[appD]]'' | * ''[[appD]]'' | ||
* ''[[appF]]'' | * ''[[appF]]'' | ||
| + | * ''[[aprE]]'' | ||
| + | * ''[[argC]]-[[argJ]]-[[argB]]-[[argD]]-[[carA]]-[[carB]]-[[argF]]'' | ||
* ''[[asnH]]'' | * ''[[asnH]]'' | ||
* ''[[bacA]]'' | * ''[[bacA]]'' | ||
| Line 31: | Line 35: | ||
* ''[[bacG]]'' | * ''[[bacG]]'' | ||
* ''[[bcaP]]'' | * ''[[bcaP]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[bkdR]]'' | * ''[[bkdR]]'' | ||
| − | * ''[[ | + | * ''[[braB]]'' |
* ''[[citB]]'' | * ''[[citB]]'' | ||
* ''[[clpQ]]'' | * ''[[clpQ]]'' | ||
| Line 52: | Line 52: | ||
* ''[[gabP]]'' | * ''[[gabP]]'' | ||
* ''[[hag]]'' | * ''[[hag]]'' | ||
| + | * ''[[hom]]-[[thrC]]-[[thrB]]'' | ||
* ''[[hutP]]-[[hutH]]-[[hutU]]-[[hutI]]-[[hutG]]-[[hutM]]'' | * ''[[hutP]]-[[hutH]]-[[hutU]]-[[hutI]]-[[hutG]]-[[hutM]]'' | ||
* ''[[ilvA]]-[[ypmP]]'' | * ''[[ilvA]]-[[ypmP]]'' | ||
| Line 59: | Line 60: | ||
* ''[[kapB]]'' | * ''[[kapB]]'' | ||
* ''[[kinB]]'' | * ''[[kinB]]'' | ||
| − | * ''[[ | + | * ''[[mpr]]'' |
| + | * ''[[nprE]]'' | ||
* ''[[nupN]]-[[nupO]]-[[nupP]]-[[nupQ]]'' | * ''[[nupN]]-[[nupO]]-[[nupP]]-[[nupQ]]'' | ||
| + | * ''[[oppA]]-[[oppB]]-[[oppC]]-[[oppD]]-[[oppF]]'' | ||
* ''[[phrA]]'' | * ''[[phrA]]'' | ||
* ''[[phrC]]'' | * ''[[phrC]]'' | ||
* ''[[phrE]]'' | * ''[[phrE]]'' | ||
| − | * ''[[ptb]]'' | + | * ''[[ptb]]-[[bcd]]-[[buk]]-[[lpdV]]-[[bkdAA]]-[[bkdAB]]-[[bkdB]]'' |
* ''[[putB]]-[[putC]]'' | * ''[[putB]]-[[putC]]'' | ||
* ''[[rapA]]'' | * ''[[rapA]]'' | ||
| Line 71: | Line 74: | ||
* ''[[rocA]]-[[rocB]]-[[rocC]]'' | * ''[[rocA]]-[[rocB]]-[[rocC]]'' | ||
* ''[[rocD]]-[[rocE]]-[[rocF]]'' | * ''[[rocD]]-[[rocE]]-[[rocF]]'' | ||
| + | * ''[[scoC]]'' | ||
* ''[[srfAA]]-[[srfAB]]-[[comS]]-[[srfAC]]-[[srfAD]]'' | * ''[[srfAA]]-[[srfAB]]-[[comS]]-[[srfAC]]-[[srfAD]]'' | ||
| + | * ''[[thrD]]'' | ||
* ''[[ureA]]-[[ureB]]-[[ureC]]'' | * ''[[ureA]]-[[ureB]]-[[ureC]]'' | ||
| + | * ''[[vpr]]'' | ||
* ''[[ybgE]]'' | * ''[[ybgE]]'' | ||
* ''[[ycgA]]'' | * ''[[ycgA]]'' | ||
| + | |||
* ''[[yhjC]]'' | * ''[[yhjC]]'' | ||
* ''[[ykfA]]'' | * ''[[ykfA]]'' | ||
| Line 81: | Line 88: | ||
* ''[[ykfD]]'' | * ''[[ykfD]]'' | ||
* ''[[ylmA]]'' | * ''[[ylmA]]'' | ||
| + | * ''[[yoyD]]'' | ||
* ''[[yuiA]]'' | * ''[[yuiA]]'' | ||
* ''[[yuiB]]'' | * ''[[yuiB]]'' | ||
* ''[[yuiC]]'' | * ''[[yuiC]]'' | ||
* ''[[yurJ]]'' | * ''[[yurJ]]'' | ||
| + | * ''[[ywaA]]'' | ||
* ''[[yxaM]]'' | * ''[[yxaM]]'' | ||
* ''[[yxbA]]'' | * ''[[yxbA]]'' | ||
| Line 93: | Line 102: | ||
= Important publications on the [[CodY]] regulon = | = Important publications on the [[CodY]] regulon = | ||
| − | <pubmed>18083814 17982469 15802253 12618455 23569278 </pubmed> | + | <pubmed>18083814 17982469 15802253 12618455 23569278 24462007 24843172 </pubmed> |
=Back to [[regulons]]= | =Back to [[regulons]]= | ||
Latest revision as of 17:43, 5 June 2016
| Regulator | |
Contents
Genes in this regulon
Activation
Repression
- acsA
- amhX
- ansZ
- appA/1
- appA/2
- appB
- appC
- appD
- appF
- aprE
- argC-argJ-argB-argD-carA-carB-argF
- asnH
- bacA
- bacB
- bacC
- bacD
- bacE
- bacF
- bacG
- bcaP
- bkdR
- braB
- citB
- clpQ
- clpY
- codV
- codY
- comK
- dppA
- dppB
- dppC
- dppD
- dppE
- flgB-flgC-fliE-fliF-fliG-fliH-fliI-fliJ-ylxF-fliK-flgD-flgE-fliL-fliM-fliY-cheY-fliZ-fliP-fliQ-fliR-flhB-flhA-flhF-flhG-cheB-cheA-cheW-cheC-cheD-sigD-swrB
- frlB-frlO-frlN-frlM-frlD
- gabP
- hag
- hom-thrC-thrB
- hutP-hutH-hutU-hutI-hutG-hutM
- ilvA-ypmP
- ilvB-ilvH-ilvC-leuA-leuB-leuC-leuD
- ilvD
- ispA
- kapB
- kinB
- mpr
- nprE
- nupN-nupO-nupP-nupQ
- oppA-oppB-oppC-oppD-oppF
- phrA
- phrC
- phrE
- ptb-bcd-buk-lpdV-bkdAA-bkdAB-bkdB
- putB-putC
- rapA
- rapC
- rapE
- rocA-rocB-rocC
- rocD-rocE-rocF
- scoC
- srfAA-srfAB-comS-srfAC-srfAD
- thrD
- ureA-ureB-ureC
- vpr
- ybgE
- ycgA
Important publications on the CodY regulon
Shaun R Brinsmade, Elizabeth L Alexander, Jonathan Livny, Arion I Stettner, Daniel Segrè, Kyu Y Rhee, Abraham L Sonenshein
Hierarchical expression of genes controlled by the Bacillus subtilis global regulatory protein CodY.
Proc Natl Acad Sci U S A: 2014, 111(22);8227-32
[PubMed:24843172]
[WorldCat.org]
[DOI]
(I p)
Tobias Geiger, Christiane Wolz
Intersection of the stringent response and the CodY regulon in low GC Gram-positive bacteria.
Int J Med Microbiol: 2014, 304(2);150-5
[PubMed:24462007]
[WorldCat.org]
[DOI]
(I p)
Boris R Belitsky, Abraham L Sonenshein
Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution.
Proc Natl Acad Sci U S A: 2013, 110(17);7026-31
[PubMed:23569278]
[WorldCat.org]
[DOI]
(I p)
Boris R Belitsky, Abraham L Sonenshein
Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis.
J Bacteriol: 2008, 190(4);1224-36
[PubMed:18083814]
[WorldCat.org]
[DOI]
(I p)
Abraham L Sonenshein
Control of key metabolic intersections in Bacillus subtilis.
Nat Rev Microbiol: 2007, 5(12);917-27
[PubMed:17982469]
[WorldCat.org]
[DOI]
(I p)
Abraham L Sonenshein
CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria.
Curr Opin Microbiol: 2005, 8(2);203-7
[PubMed:15802253]
[WorldCat.org]
[DOI]
(P p)
Virginie Molle, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.
J Bacteriol: 2003, 185(6);1911-22
[PubMed:12618455]
[WorldCat.org]
[DOI]
(P p)
