YaaK

Gene name	yaaK
Synonyms
Essential	no
Product	unknown
Function	unknown
Gene expression levels in SubtiExpress: yaaK
MW, pI	11 kDa, 4.536
Gene length, protein length	321 bp, 107 aa
Immediate neighbours	dnaX, recR
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

proteins of unknown function

The gene

Basic information

• Locus tag: BSU00200

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

Additional information

• The E.coli homolog: ybaB

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: UPF0133 family (according to Swiss-Prot)

• Paralogous protein(s):

• The corresponding gene in E. coli: EcoliWiki PubMed

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• Structure:

• UniProt: P24281

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: yaaK PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information: the mRNA is very stable (half-life > 15 min) PubMed

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Anne E Cooley, Sean P Riley, Keith Kral, M Clarke Miller, Edward DeMoll, Michael G Fried, Brian Stevenson
DNA-binding by Haemophilus influenzae and Escherichia coli YbaB, members of a widely-distributed bacterial protein family.
BMC Microbiol: 2009, 9;137
[PubMed:19594923] [WorldCat.org] [DOI] (I e)

G Hambraeus, C von Wachenfeldt, L Hederstedt
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs.
Mol Genet Genomics: 2003, 269(5);706-14
[PubMed:12884008] [WorldCat.org] [DOI] (P p)