Difference between revisions of "YabC"

From SubtiWiki
Jump to: navigation, search
(Database entries)
Line 52: Line 52:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00360&redirect=T BSU00360]
  
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
Line 87: Line 88:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00360&redirect=T BSU00360]
  
 
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3kwp 3KWP] (from ''Lactobacillus brevis'', 51% identity)
 
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3kwp 3KWP] (from ''Lactobacillus brevis'', 51% identity)

Revision as of 12:45, 2 April 2014

  • Description: similar to 16S rRNA methyltransferase

Gene name yabC
Synonyms
Essential no
Product 16S rRNA methyltransferase
Function rRNA modification
Gene expression levels in SubtiExpress: yabC
MW, pI 32 kDa, 5.518
Gene length, protein length 876 bp, 292 aa
Immediate neighbours yazA, abrB
Sequences Protein DNA DNA_with_flanks
Genetic context
YabC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YabC expression.png















Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU00360

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

  • The E.coli homolog: rsmI

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0011 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3KWP (from Lactobacillus brevis, 51% identity)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849] [WorldCat.org] [DOI] (I p)

Satoshi Kimura, Tsutomu Suzuki
Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA.
Nucleic Acids Res: 2010, 38(4);1341-52
[PubMed:19965768] [WorldCat.org] [DOI] (I p)