Difference between revisions of "YndE"
| Line 69: | Line 69: | ||
* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | * | + | ** amino acid, polyamine, organocation (APC) family of transporters, [http://www.tcdb.org/search/result.php?tc=2.A.3 TC 2.A.3] |
| − | * '''Paralogous protein(s):''' | + | * '''Paralogous protein(s):''' [[GerAB]], [[GerBB]], [[GerKB]] |
=== Extended information on the protein === | === Extended information on the protein === | ||
| Line 98: | Line 98: | ||
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17760] | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17760] | ||
| − | * ''' | + | * '''[http://www.tcdb.org/ T.C.] number:''' [http://www.tcdb.org/search/result.php?tc=2.A.3.9.4 2.A.3.9.4] |
=== Additional information=== | === Additional information=== | ||
Revision as of 13:22, 28 November 2013
| Gene name | yndE |
| Synonyms | |
| Essential | no |
| Product | part of the YndD-YndE-YndF germinant receptor |
| Function | germination |
| Gene expression levels in SubtiExpress: yndE | |
| MW, pI | 40 kDa, 9.092 |
| Gene length, protein length | 1089 bp, 363 aa |
| Immediate neighbours | yndD, yndF |
| Sequences | Protein DNA DNA_with_flanks |
| Genetic context File:YndE context.gif This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
germination, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17760
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- amino acid, polyamine, organocation (APC) family of transporters, TC 2.A.3
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31809
- KEGG entry: [3]
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Stephanie T Wang, Barbara Setlow, Erin M Conlon, Jessica L Lyon, Daisuke Imamura, Tsutomu Sato, Peter Setlow, Richard Losick, Patrick Eichenberger
The forespore line of gene expression in Bacillus subtilis.
J Mol Biol: 2006, 358(1);16-37
[PubMed:16497325]
[WorldCat.org]
[DOI]
(P p)
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
M Paidhungat, P Setlow
Role of ger proteins in nutrient and nonnutrient triggering of spore germination in Bacillus subtilis.
J Bacteriol: 2000, 182(9);2513-9
[PubMed:10762253]
[WorldCat.org]
[DOI]
(P p)
