Difference between revisions of "YfkS"
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| − | * '''Description:''' D protein for the [[YfkQ]]-[[YfkR]]-[[YfkT]] germinant receptor of unknown specificity, general stress protein, survival of ethanol | + | * '''Description:''' D protein for the [[YfkQ]]-[[YfkR]]-[[YfkT]] germinant receptor of unknown specificity, general stress protein, survival of ethanol and paraquat stresses <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"| '''Product''' || D protein for the [[YfkQ]]-[[YfkR]]-[[YfkT]] germinant receptor | |style="background:#ABCDEF;" align="center"| '''Product''' || D protein for the [[YfkQ]]-[[YfkR]]-[[YfkT]] germinant receptor | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]] | + | |style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]], survival of of stress conditions |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07770 yfkS] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07770 yfkS] | ||
| Line 38: | Line 38: | ||
= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
{{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}}, | {{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}}, | ||
| + | {{SubtiWiki category|[[resistance against oxidative and electrophile stress]]}}, | ||
{{SubtiWiki category|[[germination]]}}, | {{SubtiWiki category|[[germination]]}}, | ||
{{SubtiWiki category|[[membrane proteins]]}} | {{SubtiWiki category|[[membrane proteins]]}} | ||
| Line 137: | Line 138: | ||
=References= | =References= | ||
| − | <pubmed>15699190 22383849 10762253 15805528, 23625846 </pubmed> | + | <pubmed>15699190 22383849 10762253 15805528, 23625846 22582280</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 19:04, 15 September 2013
- Description: D protein for the YfkQ-YfkR-YfkT germinant receptor of unknown specificity, general stress protein, survival of ethanol and paraquat stresses
| Gene name | yfkS |
| Synonyms | |
| Essential | no |
| Product | D protein for the YfkQ-YfkR-YfkT germinant receptor |
| Function | germination, survival of of stress conditions |
| Gene expression levels in SubtiExpress: yfkS | |
| MW, pI | 7 kDa, 10.009 |
| Gene length, protein length | 198 bp, 66 aa |
| Immediate neighbours | yfkT, yfkR |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), resistance against oxidative and electrophile stress, germination, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU07770
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O35036
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- induced by stress (SigB) PubMed
- expressed during sporulation in the forespore PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Arturo Ramirez-Peralta, Srishti Gupta, Xuan Yi Butzin, Barbara Setlow, George Korza, Marco-Antonio Leyva-Vazquez, Graham Christie, Peter Setlow
Identification of new proteins that modulate the germination of spores of bacillus species.
J Bacteriol: 2013, 195(13);3009-21
[PubMed:23625846]
[WorldCat.org]
[DOI]
(I p)
Alexander Reder, Dirk Höper, Ulf Gerth, Michael Hecker
Contributions of individual σB-dependent general stress genes to oxidative stress resistance of Bacillus subtilis.
J Bacteriol: 2012, 194(14);3601-10
[PubMed:22582280]
[WorldCat.org]
[DOI]
(I p)
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
M Paidhungat, P Setlow
Role of ger proteins in nutrient and nonnutrient triggering of spore germination in Bacillus subtilis.
J Bacteriol: 2000, 182(9);2513-9
[PubMed:10762253]
[WorldCat.org]
[DOI]
(P p)
