Difference between revisions of "RapI"
Line 28: | Line 28: | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
|- | |- | ||
− | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rapI_547306_548481_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:rapI_expression.png|500px]] | + | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rapI_547306_548481_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:rapI_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05010]] |
|- | |- | ||
|} | |} |
Revision as of 12:37, 16 May 2013
- Description: response regulator aspartate phosphatase, antagonist of ImmR
Gene name | rapI |
Synonyms | yddL |
Essential | no |
Product | response regulator aspartate phosphatase |
Function | control of transfer of the mobile genetic element ICEBs1 |
Gene expression levels in SubtiExpress: rapI | |
Interactions involving this protein in SubtInteract: RapI | |
MW, pI | 46 kDa, 5.054 |
Gene length, protein length | 1173 bp, 391 aa |
Immediate neighbours | yddK, phrI |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
protein modification, transcription factors and their control, quorum sensing, mobile genetic elements
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU05010
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: binds ImmR and inhibits its activity, this results in induction of the genes for the transfer of the mobile genetic element ICEBs1 PubMed
- Protein family: RAP family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity: binding of PhrI indicates that neighbour cells do already contain the genetic element ICEBs1, this results in inactivation of RapI PubMed
Database entries
- UniProt: P96649
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References