Difference between revisions of "YndF"
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| − | * '''Description:''' similar to spore germination protein <br/><br/> | + | * '''Description:''' similar to spore [[germination]] protein <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** expressed late during sporulation in the forespore ([[SigG]]) {{PubMed|15699190,16497325}} | + | ** expressed late during [[sporulation]] in the forespore ([[SigG]]) {{PubMed|15699190,16497325}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 136: | Line 136: | ||
=References= | =References= | ||
| − | <pubmed> 15699190,16497325</pubmed> | + | <pubmed> 15699190,16497325 10762253 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 17:50, 30 April 2013
- Description: similar to spore germination protein
| Gene name | yndF |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yndF | |
| MW, pI | 44 kDa, 7.263 |
| Gene length, protein length | 1212 bp, 404 aa |
| Immediate neighbours | yndE, yndG |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
| Genetic context File:YndF context.gif This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
germination, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17770
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: gerABKC lipoprotein family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31810
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- expressed late during sporulation in the forespore (SigG) PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Stephanie T Wang, Barbara Setlow, Erin M Conlon, Jessica L Lyon, Daisuke Imamura, Tsutomu Sato, Peter Setlow, Richard Losick, Patrick Eichenberger
The forespore line of gene expression in Bacillus subtilis.
J Mol Biol: 2006, 358(1);16-37
[PubMed:16497325]
[WorldCat.org]
[DOI]
(P p)
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
M Paidhungat, P Setlow
Role of ger proteins in nutrient and nonnutrient triggering of spore germination in Bacillus subtilis.
J Bacteriol: 2000, 182(9);2513-9
[PubMed:10762253]
[WorldCat.org]
[DOI]
(P p)
