Difference between revisions of "CodY regulon"
| Line 43: | Line 43: | ||
* ''[[codY]]'' | * ''[[codY]]'' | ||
* ''[[comK]]'' | * ''[[comK]]'' | ||
| − | |||
* ''[[dppA]]'' | * ''[[dppA]]'' | ||
* ''[[dppB]]'' | * ''[[dppB]]'' | ||
| Line 53: | Line 52: | ||
* ''[[gabP]]'' | * ''[[gabP]]'' | ||
* ''[[hag]]'' | * ''[[hag]]'' | ||
| − | * ''[[ | + | * ''[[hutP]]-[[hutH]]-[[hutU]]-[[hutI]]-[[hutG]]-[[hutM]]'' |
| − | + | * ''[[ilvA]]-[[ypmP]]'' | |
| − | + | * ''[[ilvB]]-[[ilvH]]-[[ilvC]]-[[leuA]]-[[leuB]]-[[leuC]]-[[leuD]]'' | |
| − | |||
| − | * ''[[ | ||
| − | |||
| − | * ''[[ | ||
| − | |||
| − | |||
* ''[[ilvD]]'' | * ''[[ilvD]]'' | ||
| − | * ''[[ | + | * ''[[ispA]]'' |
* ''[[kapB]]'' | * ''[[kapB]]'' | ||
* ''[[kinB]]'' | * ''[[kinB]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[lpdV]]'' | * ''[[lpdV]]'' | ||
* ''[[nupN]]-[[nupO]]-[[nupP]]-[[nupQ]]'' | * ''[[nupN]]-[[nupO]]-[[nupP]]-[[nupQ]]'' | ||
| Line 80: | Line 69: | ||
* ''[[rapC]]'' | * ''[[rapC]]'' | ||
* ''[[rapE]]'' | * ''[[rapE]]'' | ||
| − | * ''[[rocA]] | + | * ''[[rocA]]-[[rocB]]-[[rocC]]'' |
| − | + | * ''[[rocD]]-[[rocE]]-[[rocF]]'' | |
| − | + | * ''[[srfAA]]-[[srfAB]]-[[comS]]-[[srfAC]]-[[srfAD]]'' | |
| − | * ''[[rocD]] | + | * ''[[ureA]]-[[ureB]]-[[ureC]]'' |
| − | |||
| − | |||
| − | * ''[[srfAA]] | ||
| − | |||
| − | |||
| − | |||
| − | * ''[[ureA]] | ||
| − | |||
| − | |||
* ''[[ybgE]]'' | * ''[[ybgE]]'' | ||
* ''[[ycgA]]'' | * ''[[ycgA]]'' | ||
| Line 101: | Line 81: | ||
* ''[[ykfD]]'' | * ''[[ykfD]]'' | ||
* ''[[ylmA]]'' | * ''[[ylmA]]'' | ||
| − | |||
| − | |||
* ''[[yuiA]]'' | * ''[[yuiA]]'' | ||
* ''[[yuiB]]'' | * ''[[yuiB]]'' | ||
Revision as of 08:27, 19 April 2013
| Regulator | |
Contents
Genes in this regulon
Activation
Repression
- acsA
- ansZ
- appA/1
- appA/2
- appB
- appC
- appD
- appF
- asnH
- bacA
- bacB
- bacC
- bacD
- bacE
- bacF
- bacG
- bcaP
- bcd
- bkdAA
- bkdAB
- bkdB
- bkdR
- buk
- citB
- clpQ
- clpY
- codV
- codY
- comK
- dppA
- dppB
- dppC
- dppD
- dppE
- flgB-flgC-fliE-fliF-fliG-fliH-fliI-fliJ-ylxF-fliK-flgD-flgE-fliL-fliM-fliY-cheY-fliZ-fliP-fliQ-fliR-flhB-flhA-flhF-flhG-cheB-cheA-cheW-cheC-cheD-sigD-swrB
- frlB-frlO-frlN-frlM-frlD
- gabP
- hag
- hutP-hutH-hutU-hutI-hutG-hutM
- ilvA-ypmP
- ilvB-ilvH-ilvC-leuA-leuB-leuC-leuD
- ilvD
- ispA
- kapB
- kinB
- lpdV
- nupN-nupO-nupP-nupQ
- phrA
- phrC
- phrE
- ptb
- putB-putC
- rapA
- rapC
- rapE
- rocA-rocB-rocC
- rocD-rocE-rocF
- srfAA-srfAB-comS-srfAC-srfAD
- ureA-ureB-ureC
- ybgE
- ycgA
- yhjC
- ykfA
- ykfB
- ykfC
- ykfD
- ylmA
- yuiA
- yuiB
- yuiC
- yurJ
- yxaM
- yxbA
- yxbB
- yxbC
- yxbD
- yxnB
Important publications on the CodY regulon
Boris R Belitsky, Abraham L Sonenshein
Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution.
Proc Natl Acad Sci U S A: 2013, 110(17);7026-31
[PubMed:23569278]
[WorldCat.org]
[DOI]
(I p)
Boris R Belitsky, Abraham L Sonenshein
Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis.
J Bacteriol: 2008, 190(4);1224-36
[PubMed:18083814]
[WorldCat.org]
[DOI]
(I p)
Abraham L Sonenshein
Control of key metabolic intersections in Bacillus subtilis.
Nat Rev Microbiol: 2007, 5(12);917-27
[PubMed:17982469]
[WorldCat.org]
[DOI]
(I p)
Abraham L Sonenshein
CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria.
Curr Opin Microbiol: 2005, 8(2);203-7
[PubMed:15802253]
[WorldCat.org]
[DOI]
(P p)
Virginie Molle, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.
J Bacteriol: 2003, 185(6);1911-22
[PubMed:12618455]
[WorldCat.org]
[DOI]
(P p)
