Difference between revisions of "RemA"
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
| − | {{SubtiWiki category|[[biofilm formation]]}} | + | {{SubtiWiki category|[[biofilm formation]]}}, |
| + | {{SubtiWiki category|[[sporulation proteins]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[SigF regulon]]}} | |
=The gene= | =The gene= | ||
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=== Additional information=== | === Additional information=== | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylzA_1641672_1641941_1 remA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylzA_1641672_1641941_1 remA] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' [[SigF]] {{PubMed|23396918}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| − | + | ** expressed during vegetative growth and early during sporulation in the forespore ([[SigF]]) {{PubMed|23396918}} | |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
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=References= | =References= | ||
'''Additional publications:''' {{PubMed|22329926}} | '''Additional publications:''' {{PubMed|22329926}} | ||
| − | <pubmed>,19363116, 19363116 23123912 </pubmed> | + | <pubmed>,19363116, 19363116 23123912 23396918 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 09:58, 13 February 2013
- Description: involved in the activation of biofilm matrix biosynthetic operons, acts in parallel to SinR, AbrB, and DegU
| Gene name | remA |
| Synonyms | ylzA |
| Essential | no |
| Product | regulator of the extracellular matrix |
| Function | control of biofilm formation |
| Gene expression levels in SubtiExpress: remA | |
| Metabolic function and regulation of this protein in SubtiPathways: Nucleotides (regulation) | |
| MW, pI | 9 kDa, 7.178 |
| Gene length, protein length | 267 bp, 89 aa |
| Immediate neighbours | yloC, gmk |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
biofilm formation, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU15670
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: UPF0296 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: Q7WY72
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Daniel Kearns, Indiana University, Bloomington, USA, homepage
Your additional remarks
References
Additional publications: PubMed
Ana B Abecasis, Mónica Serrano, Renato Alves, Leonor Quintais, José B Pereira-Leal, Adriano O Henriques
A genomic signature and the identification of new sporulation genes.
J Bacteriol: 2013, 195(9);2101-15
[PubMed:23396918]
[WorldCat.org]
[DOI]
(I p)
Bjorn A Traag, Antonia Pugliese, Jonathan A Eisen, Richard Losick
Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.
J Bacteriol: 2013, 195(2);253-60
[PubMed:23123912]
[WorldCat.org]
[DOI]
(I p)
Jared T Winkelman, Kris M Blair, Daniel B Kearns
RemA (YlzA) and RemB (YaaB) regulate extracellular matrix operon expression and biofilm formation in Bacillus subtilis.
J Bacteriol: 2009, 191(12);3981-91
[PubMed:19363116]
[WorldCat.org]
[DOI]
(I p)
