Difference between revisions of "AlbF"

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* '''Description:''' antilisterial bacteriocin (subtilosin) production <br/><br/>
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{| align="right" border="1" cellpadding="2"
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|-
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''albF''
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|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ywhN ''
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|-
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
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|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || antilisterial bacteriocin (subtilosin) production
 +
|-
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU37420 albF]
 +
|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 5.42 
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|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1278 bp, 426 aa
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|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[albE]]'', ''[[albG]]''
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|-
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15769&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 +
|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:albF_context.gif]]
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  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|-
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=albF_3841017_3842297_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:albF_expression.png|500px]]
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|-
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|}
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__TOC__
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<br/><br/><br/><br/>
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<br/><br/><br/><br/>
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<br/><br/><br/><br/>
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<br/><br/><br/><br/>
 +
<br/><br/><br/><br/>
 +
 
 +
 
 +
<br/><br/>
 +
 
 +
= [[Categories]] containing this gene/protein =
 +
{{SubtiWiki category|[[miscellaneous metabolic pathways]]}},
 +
{{SubtiWiki category|[[biosynthesis of antibacterial compounds]]}}
 +
 
 +
= This gene is a member of the following [[regulons]] =
 +
{{SubtiWiki regulon|[[AbrB regulon]]}},
 +
{{SubtiWiki regulon|[[ResD regulon]]}},
 +
{{SubtiWiki regulon|[[Rok regulon]]}}
 +
 
 +
=The gene=
 +
 
 +
=== Basic information ===
 +
 
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* '''Locus tag:''' BSU37420
 +
 
 +
===Phenotypes of a mutant ===
 +
 
 +
=== Database entries ===
 +
 
 +
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sboAX-albABCDEFG.html]
 +
 
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12466]
 +
 
 +
=== Additional information===
 +
 
 +
 
 +
 
 +
 
 +
=The protein=
 +
 
 +
=== Basic information/ Evolution ===
 +
 
 +
* '''Catalyzed reaction/ biological activity:'''
 +
 
 +
* '''Protein family:''' peptidase M16 family (according to Swiss-Prot)
 +
 
 +
* '''Paralogous protein(s):'''
 +
 
 +
=== Extended information on the protein ===
 +
 
 +
* '''Kinetic information:'''
 +
 
 +
* '''Domains:'''
 +
 
 +
* '''Modification:'''
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 +
* '''Cofactor(s):'''
 +
 
 +
* '''Effectors of protein activity:'''
 +
 
 +
* '''[[SubtInteract|Interactions]]:'''
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* '''[[Localization]]:'''
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=== Database entries ===
 +
 
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* '''Structure:'''
 +
 
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* '''UniProt:''' [http://www.uniprot.org/uniprot/P71006 P71006]
 +
 
 +
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU37420]
 +
 
 +
* '''E.C. number:'''
 +
 
 +
=== Additional information===
 +
 
 +
=Expression and regulation=
 +
* '''Operon:''' ''[[sboA]]-[[sboX]]-[[albA]]-[[albB]]-[[albC]]-[[albD]]-[[albE]]-[[albF]]-[[albG]]'' {{PubMed|10572140}}
 +
 
 +
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=albF_3841017_3842297_1 albF] {{PubMed|22383849}}
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* '''Sigma factor:''' [[SigA]] {{PubMed|xxxxxx}} {{PubMed|10572140}}
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 +
* '''Regulation:'''
 +
** repressed by [[Rok]] [http://www.ncbi.nlm.nih.gov/sites/entrez/15743949 PubMed]
 +
** expressed under anaerobic conditions ([[ResD]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10809710 PubMed]
 +
** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10572140,17720793 PubMed]
 +
 
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* '''Regulatory mechanism:'''
 +
** [[Rok]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15743949 PubMed]
 +
** [[ResD]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/10809710 PubMed]
 +
** [[AbrB]]:  transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/10572140,17720793 PubMed]
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* '''Additional information:'''
 +
 
 +
=Biological materials =
 +
 
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* '''Mutant:'''
 +
 
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* '''Expression vector:'''
 +
       
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* '''lacZ fusion:'''
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* '''GFP fusion:'''
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* '''two-hybrid system:'''
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* '''Antibody:'''
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=Labs working on this gene/protein=
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 +
=Your additional remarks=
 +
 
 +
=References=
 +
 
 +
<pubmed>10809709,10572140,,15743949,10809710,10572140,17720793, </pubmed>
 +
 
 +
[[Category:Protein-coding genes]]

Revision as of 20:13, 8 August 2012

  • Description: antilisterial bacteriocin (subtilosin) production

Gene name albF
Synonyms ywhN
Essential no
Product unknown
Function antilisterial bacteriocin (subtilosin) production
Gene expression levels in SubtiExpress: albF
MW, pI 48 kDa, 5.42
Gene length, protein length 1278 bp, 426 aa
Immediate neighbours albE, albG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
AlbF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
AlbF expression.png
























Categories containing this gene/protein

miscellaneous metabolic pathways, biosynthesis of antibacterial compounds

This gene is a member of the following regulons

AbrB regulon, ResD regulon, Rok regulon

The gene

Basic information

  • Locus tag: BSU37420

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: peptidase M16 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

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