Difference between revisions of "DtrR"
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| − | * '''Description:''' | + | * '''Description:''' D-Tyr resistance regulator ([[MarR family]]) <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''dtrR'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ipa-10r '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ywaE, ipa-10r '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || transcription factor ([[MarR family]]) |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || resistance to D-Tyr |
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38450 | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38450 dtrR] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 8.763 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 8.763 | ||
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| + | {{SubtiWiki regulon|[[DtrR regulon]]}} | ||
| + | = The [[DtrR regulon]]: ''[[dtrR]]''-''[[tyrZ]]'' = | ||
=The gene= | =The gene= | ||
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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=== Basic information/ Evolution === | === Basic information/ Evolution === | ||
| − | * '''Catalyzed reaction/ biological activity:''' | + | * '''Catalyzed reaction/ biological activity:''' repression of the ''[[dtrR]]-[[tyrZ]]'' operon {{PubMed|25733610}} |
| − | * '''Protein family:''' | + | * '''Protein family:''' [[MarR family]] |
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
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* '''Interactions:''' | * '''Interactions:''' | ||
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[dtrR]]-[[tyrZ]]'' {{PubMed|25733610}} |
| − | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywaE_3946394_3946909_1 | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywaE_3946394_3946909_1 dtrR] {{PubMed|22383849}} |
* '''Sigma factor:''' | * '''Sigma factor:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** [[DtrR]]: transcriptional repression {{PubMed|25733610}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
Revision as of 13:04, 4 March 2015
- Description: D-Tyr resistance regulator (MarR family)
| Gene name | dtrR |
| Synonyms | ywaE, ipa-10r |
| Essential | no |
| Product | transcription factor (MarR family) |
| Function | resistance to D-Tyr |
| Gene expression levels in SubtiExpress: dtrR | |
| MW, pI | 19 kDa, 8.763 |
| Gene length, protein length | 513 bp, 171 aa |
| Immediate neighbours | ywaF, tyrZ |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transcription factors and their control
This gene is a member of the following regulons
The DtrR regulon: dtrR-tyrZ
The gene
Basic information
- Locus tag: BSU38450
Phenotypes of a mutant
Database entries
- BsubCyc: BSU38450
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Protein family: MarR family
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
Database entries
- BsubCyc: BSU38450
- Structure:
- UniProt: P25150
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
