Difference between revisions of "YabC"

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(Database entries)
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00360&redirect=T BSU00360]
  
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00360&redirect=T BSU00360]
  
 
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3kwp 3KWP] (from ''Lactobacillus brevis'', 51% identity)
 
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3kwp 3KWP] (from ''Lactobacillus brevis'', 51% identity)

Revision as of 12:45, 2 April 2014

  • Description: similar to 16S rRNA methyltransferase

Gene name yabC
Synonyms
Essential no
Product 16S rRNA methyltransferase
Function rRNA modification
Gene expression levels in SubtiExpress: yabC
MW, pI 32 kDa, 5.518
Gene length, protein length 876 bp, 292 aa
Immediate neighbours yazA, abrB
Sequences Protein DNA DNA_with_flanks
Genetic context
YabC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YabC expression.png















Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU00360

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

  • The E.coli homolog: rsmI

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0011 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3KWP (from Lactobacillus brevis, 51% identity)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References