Difference between revisions of "YydH"

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(Original publications)
Line 150: Line 150:
 
<pubmed> 23106164</pubmed>
 
<pubmed> 23106164</pubmed>
 
==Original publications==
 
==Original publications==
<big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
+
<pubmed>10092453,,17921301,15743949,17921301,21815947 </pubmed>
<big>'''RNA processing in ''Bacillus subtilis'': identification of targets of the essential RNase Y.''' </big>
 
<big>Mol Microbiol. 2011 81(6): 1459-1473. </big>
 
[http://www.ncbi.nlm.nih.gov/pubmed/21815947 PubMed:21815947]
 
<pubmed>10092453,,17921301,15743949,17921301, </pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:41, 13 July 2013

Gene name yydH
Synonyms
Essential no
Product ABC transporter (membrane protein)
Function control of LiaR-LiaS activity
Gene expression levels in SubtiExpress: yydH
Interactions involving this protein in SubtInteract: YydH
MW, pI 29 kDa, 9.641
Gene length, protein length 756 bp, 252 aa
Immediate neighbours yydI, yydG
Sequences Protein DNA DNA_with_flanks
Genetic context
YydH context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YydH expression.png















Categories containing this gene/protein

ABC transporters, transcription factors and their control, membrane proteins

This gene is a member of the following regulons

AbrB regulon, Rok regulon

The gene

Basic information

  • Locus tag: BSU40160

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • the amount of the mRNA is substantially decreased upon depletion of RNase Y PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Susanne Gebhard
ABC transporters of antimicrobial peptides in Firmicutes bacteria - phylogeny, function and regulation.
Mol Microbiol: 2012, 86(6);1295-317
[PubMed:23106164] [WorldCat.org] [DOI] (I p)

Original publications