Difference between revisions of "RapI"

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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05010 rapI]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05010 rapI]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapI RapI]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RapI RapI]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 46 kDa, 5.054   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 46 kDa, 5.054   

Revision as of 15:16, 11 November 2013

Gene name rapI
Synonyms yddL
Essential no
Product response regulator aspartate phosphatase
Function control of transfer of the mobile
genetic element ICEBs1
Gene expression levels in SubtiExpress: rapI
Interactions involving this protein in SubtInteract: RapI
MW, pI 46 kDa, 5.054
Gene length, protein length 1173 bp, 391 aa
Immediate neighbours yddK, phrI
Sequences Protein DNA DNA_with_flanks
Genetic context
RapI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RapI expression.png















Categories containing this gene/protein

protein modification, transcription factors and their control, quorum sensing, mobile genetic elements

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU05010

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: binds ImmR and inhibits its activity, this results in induction of the genes for the transfer of the mobile genetic element ICEBs1 PubMed
  • Protein family: RAP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: binding of PhrI indicates that neighbour cells do already contain the genetic element ICEBs1, this results in inactivation of RapI PubMed

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References