Difference between revisions of "FlgM"

From SubtiWiki
Jump to: navigation, search
Line 14: Line 14:
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigD]] activity
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigD]] activity
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU35430 flgM]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35430 flgM]
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/FlgM FlgM]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/FlgM FlgM]
Line 24: Line 24:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvyG]]'', ''[[yvyF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvyG]]'', ''[[yvyF]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15560&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35430 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:flgM_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:flgM_context.gif]]

Revision as of 13:59, 13 May 2013

  • Description: anti-SigD, regulation of flagellin, motility, and chemotaxis

Gene name flgM
Synonyms
Essential no
Product anti-SigD
Function control of SigD activity
Gene expression levels in SubtiExpress: flgM
Interactions involving this protein in SubtInteract: FlgM
MW, pI 9 kDa, 9.918
Gene length, protein length 264 bp, 88 aa
Immediate neighbours yvyG, yvyF
Sequences Protein DNA Advanced_DNA
Genetic context
FlgM context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
FlgM expression.png















Categories containing this gene/protein

sigma factors and their control, motility and chemotaxis

This gene is a member of the following regulons

ComK regulon, DegU regulon, ScoC regulon, SigD regulon

The gene

Basic information

  • Locus tag: BSU35430

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: flgM family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed