Difference between revisions of "GerKA"
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* '''Domains:''' | * '''Domains:''' | ||
| + | ** contains multiple membrane-spanning domains {{PubMed|23335419}} | ||
* '''Modification:''' | * '''Modification:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 gerKA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 gerKA] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' SigG {{PubMed|16707705}} | + | * '''[[Sigma factor]]:''' SigG {{PubMed|16707705}} |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
'''Additional publications:''' {{PubMed|22343299,16740944}} | '''Additional publications:''' {{PubMed|22343299,16740944}} | ||
| − | <pubmed>16707705,16352818, 21696470</pubmed> | + | <pubmed>16707705,16352818, 21696470 23335419</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 17:01, 25 January 2013
- Description: nutrient receptor
| Gene name | gerKA |
| Synonyms | |
| Essential | no |
| Product | nutrient receptor |
| Function | germination response to the combination of glucose, fructose, aspartate, and KCl |
| Gene expression levels in SubtiExpress: gerKA | |
| Interactions involving this protein in SubtInteract: GerKA | |
| MW, pI | 60 kDa, 5.206 |
| Gene length, protein length | 1632 bp, 544 aa |
| Immediate neighbours | yczF, gerKC |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
germination, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU03700
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: gerABKA family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- contains multiple membrane-spanning domains PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- outer surface of the inner spore membrane PubMed
Database entries
- Structure:
- UniProt: P49939
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor: SigG PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
George Korza, Peter Setlow
Topology and accessibility of germination proteins in the Bacillus subtilis spore inner membrane.
J Bacteriol: 2013, 195(7);1484-91
[PubMed:23335419]
[WorldCat.org]
[DOI]
(I p)
Keren K Griffiths, Jingqiao Zhang, Ann E Cowan, Ji Yu, Peter Setlow
Germination proteins in the inner membrane of dormant Bacillus subtilis spores colocalize in a discrete cluster.
Mol Microbiol: 2011, 81(4);1061-77
[PubMed:21696470]
[WorldCat.org]
[DOI]
(I p)
Takao Igarashi, Peter Setlow
Transcription of the Bacillus subtilis gerK operon, which encodes a spore germinant receptor, and comparison with that of operons encoding other germinant receptors.
J Bacteriol: 2006, 188(11);4131-6
[PubMed:16707705]
[WorldCat.org]
[DOI]
(P p)
Swaroopa Atluri, Katerina Ragkousi, Donna E Cortezzo, Peter Setlow
Cooperativity between different nutrient receptors in germination of spores of Bacillus subtilis and reduction of this cooperativity by alterations in the GerB receptor.
J Bacteriol: 2006, 188(1);28-36
[PubMed:16352818]
[WorldCat.org]
[DOI]
(P p)
