Difference between revisions of "YmfD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || iron acquisition | |style="background:#ABCDEF;" align="center"|'''Function''' || iron acquisition | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16825 ymfD] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 44 kDa, 8.355 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 44 kDa, 8.355 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ymfC]]'', ''[[ymfF]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ymfC]]'', ''[[ymfF]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16825 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16825 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16825 Advanced_DNA] |
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Revision as of 12:52, 13 May 2013
- Description: exporter for the siderophore bacillibactin
| Gene name | ymfD |
| Synonyms | |
| Essential | no |
| Product | bacillibactin exporter |
| Function | iron acquisition |
| Gene expression levels in SubtiExpress: ymfD | |
| MW, pI | 44 kDa, 8.355 |
| Gene length, protein length | 1206 bp, 402 aa |
| Immediate neighbours | ymfC, ymfF |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
transporters/ other, acquisition of iron, iron metabolism, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU16825
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: major facilitator superfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- Swiss prot entry: O31762
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Marcus Miethke, Sarah Schmidt, Mohamed A Marahiel
The major facilitator superfamily-type transporter YmfE and the multidrug-efflux activator Mta mediate bacillibactin secretion in Bacillus subtilis.
J Bacteriol: 2008, 190(15);5143-52
[PubMed:18502870]
[WorldCat.org]
[DOI]
(I p)
