ymfC

ymfC
168

similar to transcriptional regulator (GntR family)

Locus
BSU_16810
Molecular weight
27.75 kDa
Isoelectric point
6.4
Protein length
241 aaSequenceBlast
Gene length
726 bpSequenceBlast
Function
unknown
Product
transcriptional regulator (GntR family)
Essential
no
Synonyms
ymfC
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG2188 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,754,785 → 1,755,510
The protein
Protein family
GntR family of transcription factors
Domains
HTH gntR-type domain (aa 8-76) (according to UniProt)
Structure
2WV0 (PDB) (NagR, corresponds to aa 83 ... 307 of YmfC, 30% identity)
O31761 (AlphaFold)
Paralogous protein(s)
GamR, NagR, GmuR, FrlR, TreR
Expression and Regulation
Operons
Genes
ymfC
Description
PubMed
Open in new tab

ymfC

2025-03-17 18:53:30

Jstuelk

55

3b1aca4ad05a750c220e5f1574fa4177d96220a1

1BB27394B9DC7B63DE90D5D63A002879C94B9D14

Genes
spoIIIE-ymfC
Description
PubMed
Sigma factors
SigA: sigma factor, PubMed, in sigA regulon
Open in new tab

spoIIIE→ymfC

2025-03-17 14:44:58

Jstuelk

101

20931424e7f3957a516f01163ac7a07a7038a992

7D54335218ECF5D963FC72675848DF5C0DA67794

Biological materials
Mutant
MGNA-B115 (ymfC::erm), available at the NBRP B. subtilis, Japan
BKE16810 (ΔymfC::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGTTTCCCCTCCGTAAAC,  downstream forward: _UP4_TAAAAACGGACGCCTGTATG
BKK16810 (ΔymfC::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGTTTCCCCTCCGTAAAC,  downstream forward: _UP4_TAAAAACGGACGCCTGTATG
References
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F9E0C645BCCD9A299E951D0574321C1FACA8DE4C

Page visits: 1798

Time of last update: 2025-04-02 15:10:45

Author of last update: Melvin.boenninger