Difference between revisions of "EpsI"

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= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=epsI_3520030_3521106_-1 epsI] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=epsI_3520030_3521106_-1 epsI] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigA]] {{PubMed|15661000}}
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* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|15661000}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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<pubmed>20374491 20230605 </pubmed>
 
<pubmed>20374491 20230605 </pubmed>
 
===Other original publications===
 
===Other original publications===
'''Additional publications:''' {{PubMed|20817675}}
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<pubmed>15661000,16430695,18047568,18647168 20720312 20817675 21856853 21815947</pubmed>
<big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
 
<big>'''RNA processing in ''Bacillus subtilis'': identification of targets of the essential RNase Y.''' </big>
 
<big>Mol Microbiol. 2011 81(6): 1459-1473. </big>
 
[http://www.ncbi.nlm.nih.gov/pubmed/21815947 PubMed:21815947]
 
 
 
<big>''Diethmaier C, Pietack N, Gunka K, Wrede C, Lehnik-Habrink M, Herzberg C, Hübner S, Stülke J''  </big>
 
<big>'''A Novel Factor Controlling Bistability in ''Bacillus subtilis'': The YmdB Protein Affects</big>
 
<big>Flagellin Expression and Biofilm Formation.''' </big>
 
<big>J Bacteriol.: 2011, 193(21):5997-6007. </big>
 
[http://www.ncbi.nlm.nih.gov/pubmed/21856853 PubMed:21856853]
 
 
 
<pubmed>15661000,16430695,18047568,18647168 20720312</pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 11:42, 27 March 2013

  • Description: extracellular polysaccharide synthesis

Gene name epsI
Synonyms yveS
Essential no
Product unknown
Function biofilm formation
Gene expression levels in SubtiExpress: epsI
Regulation of this protein in SubtiPathways:
Biofilm
MW, pI 41 kDa, 8.043
Gene length, protein length 1074 bp, 358 aa
Immediate neighbours epsJ, epsH
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YveS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
EpsI expression.png















Categories containing this gene/protein

biofilm formation

This gene is a member of the following regulons

AbrB regulon, EAR riboswitch, SinR regulon

The gene

Basic information

  • Locus tag: BSU34290

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: polysaccharide pyruvyl transferase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Richard Losick, Harvard Univ., Cambridge, USA homepage

Your additional remarks

References

Reviews

Massimiliano Marvasi, Pieter T Visscher, Lilliam Casillas Martinez
Exopolymeric substances (EPS) from Bacillus subtilis: polymers and genes encoding their synthesis.
FEMS Microbiol Lett: 2010, 313(1);1-9
[PubMed:20735481] [WorldCat.org] [DOI] (I p)

Original publications

The EAR RNA switch

Other original publications