Difference between revisions of "PhrI"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of the transfer of the <br/>mobile genetic element ICEBs1 | |style="background:#ABCDEF;" align="center"|'''Function''' || control of the transfer of the <br/>mobile genetic element ICEBs1 | ||
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| + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU05020 phrI] | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/PhrI PhrI] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/PhrI PhrI] | ||
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|colspan="2" | '''Genetic context''' <br/> [[Image:phrI_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:phrI_context.gif]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
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| + | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=phrI_548438_548557_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:phrI_expression.png|500px]] | ||
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__TOC__ | __TOC__ | ||
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** ''phrI'' {{PubMed|11466295}} | ** ''phrI'' {{PubMed|11466295}} | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=phrI_548438_548557_1 phrI] {{PubMed|22383849}} |
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| + | * '''Sigma factor:''' | ||
** ''phrI'': [[SigA]], [[SigH]] {{PubMed|11466295}} | ** ''phrI'': [[SigA]], [[SigH]] {{PubMed|11466295}} | ||
Revision as of 11:48, 7 August 2012
| Gene name | phrI |
| Synonyms | |
| Essential | no |
| Product | phosphatase (RapI) regulator |
| Function | control of the transfer of the mobile genetic element ICEBs1 |
| Gene expression levels in SubtiExpress: phrI | |
| Interactions involving this protein in SubtInteract: PhrI | |
| MW, pI | 4 kDa, 8.907 |
| Gene length, protein length | 117 bp, 39 aa |
| Immediate neighbours | rapI, yddM |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
protein modification, transcription factors and their control, quorum sensing, mobile genetic elements, short peptides
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU05020
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: binds RapI and inhibits its activity, this results in contiuned repression of the genes for the transfer of the mobile genetic element ICEBs1 by ImmR PubMed
- Protein family: phr family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31492
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Jennifer M Auchtung, Catherine A Lee, Katherine L Garrison, Alan D Grossman
Identification and characterization of the immunity repressor (ImmR) that controls the mobile genetic element ICEBs1 of Bacillus subtilis.
Mol Microbiol: 2007, 64(6);1515-28
[PubMed:17511812]
[WorldCat.org]
[DOI]
(P p)
R S McQuade, N Comella, A D Grossman
Control of a family of phosphatase regulatory genes (phr) by the alternate sigma factor sigma-H of Bacillus subtilis.
J Bacteriol: 2001, 183(16);4905-9
[PubMed:11466295]
[WorldCat.org]
[DOI]
(P p)
