Difference between revisions of "CspD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || RNA chaperone | |style="background:#ABCDEF;" align="center"|'''Function''' || RNA chaperone | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU21930 cspD] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 4.31 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 4.31 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ugtP]]'', ''[[degR]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ugtP]]'', ''[[degR]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU21930 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU21930 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU21930 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:cspD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:cspD_context.gif]] | ||
Revision as of 13:06, 13 May 2013
- Description: cold shock protein
| Gene name | cspD |
| Synonyms | |
| Essential | no |
| Product | cold shock protein |
| Function | RNA chaperone |
| Gene expression levels in SubtiExpress: cspD | |
| MW, pI | 7 kDa, 4.31 |
| Gene length, protein length | 198 bp, 66 aa |
| Immediate neighbours | ugtP, degR |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
RNA chaperones, cold stress proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU21930
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P51777
- KEGG entry: [2]
- E.C. number:
Additional information
- subject to Clp-dependent proteolysis upon glucose starvation PubMed
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- weakly induced by cold shock PubMed
- Regulatory mechanism:
- Additional information: subject to Clp-dependent proteolysis upon glucose starvation PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Michael H Weber, Mohamed A Marahiel
Bacterial cold shock responses.
Sci Prog: 2003, 86(Pt 1-2);9-75
[PubMed:12838604]
[WorldCat.org]
[DOI]
(P p)
Michael H W Weber, Mohamed A Marahiel
Coping with the cold: the cold shock response in the Gram-positive soil bacterium Bacillus subtilis.
Philos Trans R Soc Lond B Biol Sci: 2002, 357(1423);895-907
[PubMed:12171653]
[WorldCat.org]
[DOI]
(P p)
Original publications
