Difference between revisions of "Phy"
| Line 35: | Line 35: | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
| − | |||
| − | |||
| − | |||
| − | |||
<br/><br/> | <br/><br/> | ||
| Line 62: | Line 58: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
| Line 111: | Line 105: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=phy_2150108_2151256_-1 phy] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=phy_2150108_2151256_-1 phy] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' none {{PubMed|16980498}} | + | * '''[[Sigma factor]]:''' none {{PubMed|16980498}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 141: | Line 135: | ||
=References= | =References= | ||
'''Additional publications:''' {{PubMed|20817675}} | '''Additional publications:''' {{PubMed|20817675}} | ||
| − | <pubmed>18957862, 10655618 7592393 ,16980498 20601512 </pubmed> | + | <pubmed>18957862, 10655618 7592393 ,16980498 20601512 23178368 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 14:47, 28 November 2012
- Description: phytase
| Gene name | phy |
| Synonyms | yodV, yzxA |
| Essential | no |
| Product | 3-phytase |
| Function | untilization of inositol hexakisphosphate (phytate) |
| Gene expression levels in SubtiExpress: phy | |
| MW, pI | 41 kDa, 4.936 |
| Gene length, protein length | 1146 bp, 382 aa |
| Immediate neighbours | cgeB, yodU |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU19800
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Myo-inositol hexakisphosphate + H2O = 1D-myo-inositol 1,2,4,5,6-pentakisphosphate + phosphate (according to Swiss-Prot)
- Protein family: msrA Met sulfoxide reductase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- extracellular (signal peptide) PubMed
Database entries
- Structure: 3AMR
- UniProt: P42094
- KEGG entry: [3]
- E.C. number: 3.1.3.8
Additional information
Expression and regulation
- Operon: phy PubMed
- Sigma factor: none PubMed
- Regulation:
- Additional information:
- the gene is not expressed in B. subtilis due to the absene of a functional promoter PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Ameny Farhat-Khemakhem, Mamdouh Ben Ali, Ines Boukhris, Bassem Khemakhem, Emmanuelle Maguin, Samir Bejar, Hichem Chouayekh
Crucial role of Pro 257 in the thermostability of Bacillus phytases: biochemical and structural investigation.
Int J Biol Macromol: 2013, 54;9-15
[PubMed:23178368]
[WorldCat.org]
[DOI]
(I p)
Martha Guerrero-Olazarán, Lilí Rodríguez-Blanco, J Gerardo Carreon-Treviño, Juan A Gallegos-López, José M Viader-Salvadó
Expression of a Bacillus phytase C gene in Pichia pastoris and properties of the recombinant enzyme.
Appl Environ Microbiol: 2010, 76(16);5601-8
[PubMed:20601512]
[WorldCat.org]
[DOI]
(I p)
Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862]
[WorldCat.org]
[DOI]
(I p)
Oliwia Makarewicz, Sarah Dubrac, Tarek Msadek, Rainer Borriss
Dual role of the PhoP approximately P response regulator: Bacillus amyloliquefaciens FZB45 phytase gene transcription is directed by positive and negative interactions with the phyC promoter.
J Bacteriol: 2006, 188(19);6953-65
[PubMed:16980498]
[WorldCat.org]
[DOI]
(P p)
N C Ha, B C Oh, S Shin, H J Kim, T K Oh, Y O Kim, K Y Choi, B H Oh
Crystal structures of a novel, thermostable phytase in partially and fully calcium-loaded states.
Nat Struct Biol: 2000, 7(2);147-53
[PubMed:10655618]
[WorldCat.org]
[DOI]
(P p)
S Roels, R Losick
Adjacent and divergently oriented operons under the control of the sporulation regulatory protein GerE in Bacillus subtilis.
J Bacteriol: 1995, 177(21);6263-75
[PubMed:7592393]
[WorldCat.org]
[DOI]
(P p)
