Difference between revisions of "XynD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || arabinoxylan degradation | |style="background:#ABCDEF;" align="center"|'''Function''' || arabinoxylan degradation | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18160 xynD] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 8.031 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 8.031 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[xynC]]'', ''[[yngA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[xynC]]'', ''[[yngA]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18160 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18160 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18160 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:xynD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:xynD_context.gif]] | ||
Revision as of 12:57, 13 May 2013
- Description: arabinoxylan arabinofuranohydrolase
| Gene name | xynD |
| Synonyms | |
| Essential | no |
| Product | arabinoxylan arabinofuranohydrolase |
| Function | arabinoxylan degradation |
| Gene expression levels in SubtiExpress: xynD | |
| MW, pI | 54 kDa, 8.031 |
| Gene length, protein length | 1539 bp, 513 aa |
| Immediate neighbours | xynC, yngA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU18160
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to Swiss-Prot)
- Protein family: glycosyl hydrolase 43 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- extracellular (signal peptide) PubMed
Database entries
- Structure: 3C7O
- UniProt: Q45071
- KEGG entry: [2]
- E.C. number: 3.2.1.55
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862]
[WorldCat.org]
[DOI]
(I p)
