Difference between revisions of "Gdh"

From SubtiWiki
Jump to: navigation, search
m (Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk)
Line 1: Line 1:
 
+
* '''Description:''' glucose 1-dehydrogenase (NAD) <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
Line 13: Line 13:
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || germination  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || germination  
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03930 gdh]
 
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.082   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.082   
Line 26: Line 24:
 
|colspan="2" | '''Genetic context''' <br/> [[Image:gdh_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:gdh_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
 
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gdh_445344_446129_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:gdh_expression.png|500px]]
 
 
|-
 
|-
 
|}
 
|}
  
 
__TOC__
 
__TOC__
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
  
 
<br/><br/>
 
<br/><br/>
Line 109: Line 99:
 
* '''Operon:''' ''[[glcU]]-[[gdh]]'' {{PubMed|3141376}}  
 
* '''Operon:''' ''[[glcU]]-[[gdh]]'' {{PubMed|3141376}}  
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gdh_445344_446129_1 gdh] {{PubMed|22383849}}
+
* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|3141376}}  
 
 
* '''Sigma factor:''' [[SigG]] {{PubMed|3141376}}  
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 119: Line 107:
 
** [[SpoVT]]: transcription repression {{PubMed|8755877}}
 
** [[SpoVT]]: transcription repression {{PubMed|8755877}}
  
* '''Additional information:'''
+
* '''Additional information:'''  
  
 
=Biological materials =
 
=Biological materials =

Revision as of 11:20, 7 August 2012

  • Description: glucose 1-dehydrogenase (NAD)

Gene name gdh
Synonyms
Essential no
Product glucose 1-dehydrogenase (NAD)
Function germination
MW, pI 27 kDa, 5.082
Gene length, protein length 783 bp, 261 aa
Immediate neighbours glcU, ycnI
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
Gdh context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

germination

This gene is a member of the following regulons

SigG regulon, SpoVT regulon

The gene

Basic information

  • Locus tag: BSU03930

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H (according to Swiss-Prot)
  • Protein family: short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

I Bagyan, J Hobot, S Cutting
A compartmentalized regulator of developmental gene expression in Bacillus subtilis.
J Bacteriol: 1996, 178(15);4500-7
[PubMed:8755877] [WorldCat.org] [DOI] (P p)

Y Nakatani, W L Nicholson, K D Neitzke, P Setlow, E Freese
Sigma-G RNA polymerase controls forespore-specific expression of the glucose dehydrogenase operon in Bacillus subtilis.
Nucleic Acids Res: 1989, 17(3);999-1017
[PubMed:2493633] [WorldCat.org] [DOI] (P p)

P N Rather, C P Moran
Compartment-specific transcription in Bacillus subtilis: identification of the promoter for gdh.
J Bacteriol: 1988, 170(11);5086-92
[PubMed:3141376] [WorldCat.org] [DOI] (P p)

Y Fujita, R Ramaley, E Freese
Location and properties of glucose dehydrogenase in sporulating cells and spores of Bacillus subtilis.
J Bacteriol: 1977, 132(1);282-93
[PubMed:21162] [WorldCat.org] [DOI] (P p)