Difference between revisions of "AlbF"

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1804 http://hsyphtdn.posterous.com/-5530 ������� ��������� + �� ������� 5530 http://pjakmaitgw.posterous.com/123496376 ������� ������� �������� http://tjotazccm.posterous.com/samsung-d720 ������� ���� ��� �������� samsung d720- http://htqyjcmc.posterous.com/nokia-6233-51231 ������� ���� ��� ��������  ��� nokia 6233 http://dikyprk.posterous.com/playman ������� ���� playman �� ������� http://znabfhade.posterous.com/sims-1 ������� ���� ��� ��������� ��������� sims 1 http://vdxkptbjun.posterous.com/123613435 ������� ��������� ����.�� ��� ��������� http://vdxkptbjun.posterous.com/nokia-n81 ������� ���������� ������ ��� �� nokia n81 http://wmpuuh.posterous.com/logic-balls ������� ���� ��� �������� logic balls http://vvctkybki.posterous.com/123635653 ������� ���� �� ������� ���� ������� http://acurupomace.posterous.com/123475997 ������� ��������� �� ������� ��� ����������� http://xtsgrqwob.posterous.com/java ������� java-��������� ��� ������� ���������  http://yctbgt.posterous.com/nokia-nth ������� ���������� ���� ��� nokia nth http://zxjtoyoxmw.posterous.com/-nokia-n73-music-edi ������� ����������, ������� ���� ��� ��������� nokia n73 music edi http://obmecnuoeg.posterous.com/123504896 ������� ���������� ���� �� ������� ��� http://modgwdvbx.posterous.com/nokia-n73-45508 ������� ��������� ���� �� nokia n73 http://wexbrvoiev.posterous.com/nokia-5310 ������� ���� ���� �� ������� nokia 5310 http://bwvgek.posterous.com/nokia-6120c ������� ���� � ���� ��� nokia 6120c http://kqrqetuf.posterous.com/nokia-6131 ���� ��� nokia 6131 ������� ��������� http://bymkxqhu.posterous.com/microsoft-word-microsoft-excel ������� ��������� �� ������� ��� ������ microsoft word � microsoft excel http://peogoux.posterous.com/3 ������� 3 ��� �� ������� ������ ���� http://pjiedtjx.posterous.com/123499796 ������� ������� ��������� ����� �������� ����� http://vvctkybki.posterous.com/nokia-38975 ������� ����� ��������� ���� �������� nokia ����� http://hmydocap.posterous.com/-w580i ������� ����.���� ��� �������� ���� ������� w580i http://peoznzmkja.posterous.com/mp4 ������� ��������� ��� ��������� ����� �� ������� � ������� mp4 http://euzvsfavp.posterous.com/123455045 ������� ���� �� ������� ���� ���� http://xtsgrqwob.posterous.com/sony-ericsson-k790i ������� ��������� ��� �������� �������� sony ericsson k790i http://kqrqetuf.posterous.com/nokia-6300-31333 ������� ���� ��� nokia 6300, , ������� http://htqyjcmc.posterous.com/123533233 ���� �������� �� ������� ������� http://atma1974.posterous.com/l-7 ������� ��������� ��� ������� ��������� �������� l 7 http://tdiuvdtmu.posterous.com/sony-ericsson-w200i-free-kick ������� ���� ��� �������� sony ericsson w200i free kick http://ktuvqz.posterous.com/123439966 ������� ���� �� ������� ���� �������� http://dbowux.posterous.com/bluetooth-58156 ������� ��������� �������������� ���������� ����� ��������� ����� bluetooth http://inathcsep.posterous.com/nokia-e71 ������������ ��������� ��� �������� nokia e71 ������� http://wivcsnd.posterous.com/123448613 ������� �������� ������� ��� � ������� http://bwvgek.posterous.com/java-nokia-5300 ������� java ���� ��� �������� nokia 5300 http://uaiyvngprj.posterous.com/5610 ������� �������������� ��� �������� ����� 5610 http://nheajva.posterous.com/nokia-56594 ������� ���� �� ������� ������� nokia http://tjotazccm.posterous.com/nokia-n73-32427 ������� ����������� ���� nokia n73 http://aohuvrnxku.posterous.com/123484707 ������� ��������� ��� �������� ��� �� �������� ������� http://kjhkqmri.posterous.com/123531717 ������� ��������� ��� ���������� �������� �� ������ ���������� �������� http://tjotazccm.posterous.com/nokia-n78 ������� ��������� ��� �������� ��� �� ������� nokia n78 http://fidrphgz.posterous.com/2005 ������� ��������� ���������� ����� �������� 2005 http://npcnbyguo.posterous.com/xpress-music-nokia6500 ���� xpress music ��� nokia6500 ������� http://dooooqo.posterous.com/nokia-6233-37949 ������� ���� �� nokia 6233 � �������� ����������� http://veschj.posterous.com/123516547 ������� ���� ��� ���������� �������� ����� ��������� http://garnierbuero.posterous.com/123640482 ������� ��������� ��� ������ ���������� ���������� ����� ��������� ����� http://hdwbefdurm.posterous.com/sagem-6 ������� ���� ��� �������� sagem 6 http://peogoux.posterous.com/nokia-6120 ������� ��� ��������� ���� � ���������� � ������� nokia 6120
+
* '''Description:''' antilisterial bacteriocin (subtilosin) production <br/><br/>
 +
 
 +
{| align="right" border="1" cellpadding="2"
 +
|-
 +
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 +
|''albF''
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ywhN ''
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 +
|-
 +
|style="background:#ABCDEF;" align="center"|'''Function''' || antilisterial bacteriocin (subtilosin) production
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 5.42  
 +
|-
 +
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1278 bp, 426 aa
 +
|-
 +
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[albE]]'', ''[[albG]]''
 +
|-
 +
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15769&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 +
|-
 +
|colspan="2" | '''Genetic context''' <br/> [[Image:albF_context.gif]]
 +
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 +
|-
 +
|}
 +
 
 +
__TOC__
 +
 
 +
<br/><br/>
 +
 
 +
= [[Categories]] containing this gene/protein =
 +
{{SubtiWiki category|[[miscellaneous metabolic pathways]]}},
 +
{{SubtiWiki category|[[biosynthesis of antibacterial compounds]]}}
 +
 
 +
= This gene is a member of the following [[regulons]] =
 +
{{SubtiWiki regulon|[[AbrB regulon]]}},
 +
{{SubtiWiki regulon|[[ResD regulon]]}},
 +
{{SubtiWiki regulon|[[Rok regulon]]}}
 +
 
 +
=The gene=
 +
 
 +
=== Basic information ===
 +
 
 +
* '''Locus tag:''' BSU37420
 +
 
 +
===Phenotypes of a mutant ===
 +
 
 +
=== Database entries ===
 +
 
 +
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sboAX-albABCDEFG.html]
 +
 
 +
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12466]
 +
 
 +
=== Additional information===
 +
 
 +
 
 +
 
 +
 
 +
=The protein=
 +
 
 +
=== Basic information/ Evolution ===
 +
 
 +
* '''Catalyzed reaction/ biological activity:'''
 +
 
 +
* '''Protein family:''' peptidase M16 family (according to Swiss-Prot)
 +
 
 +
* '''Paralogous protein(s):'''
 +
 
 +
=== Extended information on the protein ===
 +
 
 +
* '''Kinetic information:'''
 +
 
 +
* '''Domains:'''
 +
 
 +
* '''Modification:'''
 +
 
 +
* '''Cofactor(s):'''
 +
 
 +
* '''Effectors of protein activity:'''
 +
 
 +
* '''[[SubtInteract|Interactions]]:'''
 +
 
 +
* '''[[Localization]]:'''
 +
 
 +
=== Database entries ===
 +
 
 +
* '''Structure:'''
 +
 
 +
* '''UniProt:''' [http://www.uniprot.org/uniprot/P71006 P71006]
 +
 
 +
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU37420]
 +
 
 +
* '''E.C. number:'''
 +
 
 +
=== Additional information===
 +
 
 +
=Expression and regulation=
 +
* '''Operon:''' ''[[sboA]]-[[sboX]]-[[albA]]-[[albB]]-[[albC]]-[[albD]]-[[albE]]-[[albF]]-[[albG]]'' {{PubMed|10572140}}
 +
 
 +
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=albF_3841017_3842297_1 albF] {{PubMed|22383849}}
 +
 
 +
* '''Sigma factor:''' [[SigA]] {{PubMed|xxxxxx}} {{PubMed|10572140}}
 +
 
 +
* '''Regulation:'''
 +
** repressed by [[Rok]] [http://www.ncbi.nlm.nih.gov/sites/entrez/15743949 PubMed]
 +
** expressed under anaerobic conditions ([[ResD]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10809710 PubMed]
 +
** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10572140,17720793 PubMed]
 +
 
 +
* '''Regulatory mechanism:'''
 +
** [[Rok]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15743949 PubMed]
 +
** [[ResD]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/10809710 PubMed]
 +
** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/10572140,17720793 PubMed]
 +
 
 +
* '''Additional information:'''
 +
 
 +
=Biological materials =
 +
 
 +
* '''Mutant:'''
 +
 
 +
* '''Expression vector:'''
 +
       
 +
* '''lacZ fusion:'''
 +
 
 +
* '''GFP fusion:'''
 +
 
 +
* '''two-hybrid system:'''
 +
 
 +
* '''Antibody:'''
 +
 
 +
=Labs working on this gene/protein=
 +
 
 +
=Your additional remarks=
 +
 
 +
=References=
 +
 
 +
<pubmed>10809709,10572140,,15743949,10809710,10572140,17720793, </pubmed>
 +
 
 +
[[Category:Protein-coding genes]]

Revision as of 18:52, 18 April 2012

  • Description: antilisterial bacteriocin (subtilosin) production

Gene name albF
Synonyms ywhN
Essential no
Product unknown
Function antilisterial bacteriocin (subtilosin) production
MW, pI 48 kDa, 5.42
Gene length, protein length 1278 bp, 426 aa
Immediate neighbours albE, albG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
AlbF context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

miscellaneous metabolic pathways, biosynthesis of antibacterial compounds

This gene is a member of the following regulons

AbrB regulon, ResD regulon, Rok regulon

The gene

Basic information

  • Locus tag: BSU37420

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: peptidase M16 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Mark A Strauch, Benjamin G Bobay, John Cavanagh, Fude Yao, Angelo Wilson, Yoann Le Breton
Abh and AbrB control of Bacillus subtilis antimicrobial gene expression.
J Bacteriol: 2007, 189(21);7720-32
[PubMed:17720793] [WorldCat.org] [DOI] (P p)

Mark Albano, Wiep Klaas Smits, Linh T Y Ho, Barbara Kraigher, Ines Mandic-Mulec, Oscar P Kuipers, David Dubnau
The Rok protein of Bacillus subtilis represses genes for cell surface and extracellular functions.
J Bacteriol: 2005, 187(6);2010-9
[PubMed:15743949] [WorldCat.org] [DOI] (P p)

M M Nakano, G Zheng, P Zuber
Dual control of sbo-alb operon expression by the Spo0 and ResDE systems of signal transduction under anaerobic conditions in Bacillus subtilis.
J Bacteriol: 2000, 182(11);3274-7
[PubMed:10809710] [WorldCat.org] [DOI] (P p)

G Zheng, R Hehn, P Zuber
Mutational analysis of the sbo-alb locus of Bacillus subtilis: identification of genes required for subtilosin production and immunity.
J Bacteriol: 2000, 182(11);3266-73
[PubMed:10809709] [WorldCat.org] [DOI] (P p)

G Zheng, L Z Yan, J C Vederas, P Zuber
Genes of the sbo-alb locus of Bacillus subtilis are required for production of the antilisterial bacteriocin subtilosin.
J Bacteriol: 1999, 181(23);7346-55
[PubMed:10572140] [WorldCat.org] [DOI] (P p)