Difference between revisions of "SP-beta prophage"
(→Genes in this functional category) |
(→Key publications) |
||
| (12 intermediate revisions by 2 users not shown) | |||
| Line 7: | Line 7: | ||
* 5.1.2. [[SPß prophage]] | * 5.1.2. [[SPß prophage]] | ||
* 5.1.3. [[Skin element]] | * 5.1.3. [[Skin element]] | ||
| − | * 5.1.4. [[Phage-related functions]] | + | * 5.1.4. [[Prophage 1]] |
| + | * 5.1.5. [[Prophage 3]] | ||
| + | * 5.1.6. [[Phage-related functions]] | ||
|Related= | |Related= | ||
none | none | ||
|}} | |}} | ||
| + | |||
| + | == Important notes== | ||
| + | * In 168, SP-beta disrupts the ''[[ypqP]]'' gene | ||
| + | * A strain devoid of [[PBSX prophage]] , [[SP-beta prophage]] and the [[Skin element]] (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in [[Jan Maarten van Dijl]]'s lab {{PubMed|12949151}} | ||
== Genes in this functional category == | == Genes in this functional category == | ||
| + | * ''[[as-yonT]]'' | ||
* ''[[bdbA]]'' | * ''[[bdbA]]'' | ||
* ''[[bdbB]]'' | * ''[[bdbB]]'' | ||
| Line 22: | Line 29: | ||
* ''[[ligB]]'' | * ''[[ligB]]'' | ||
* ''[[mtbP]]'' | * ''[[mtbP]]'' | ||
| + | * ''[[nonA]]'' | ||
* ''[[nrdEB]]'' | * ''[[nrdEB]]'' | ||
| + | * ''[[pghZ]]'' | ||
| + | * ''[[sprA]]'' | ||
| + | * ''[[sprB]]'' | ||
* ''[[SR4]]'' | * ''[[SR4]]'' | ||
* ''[[sspC]]'' | * ''[[sspC]]'' | ||
| Line 31: | Line 42: | ||
* ''[[uvrX]]'' | * ''[[uvrX]]'' | ||
* ''[[yojW]]'' | * ''[[yojW]]'' | ||
| − | |||
* ''[[yokB]]'' | * ''[[yokB]]'' | ||
* ''[[yokC]]'' | * ''[[yokC]]'' | ||
| Line 38: | Line 48: | ||
* ''[[yokF]]'' | * ''[[yokF]]'' | ||
* ''[[yokG]]'' | * ''[[yokG]]'' | ||
| + | * ''[[yokH]]'' | ||
* ''[[yokI]]'' | * ''[[yokI]]'' | ||
* ''[[yokJ]]'' | * ''[[yokJ]]'' | ||
| Line 45: | Line 56: | ||
* ''[[yolB]]'' | * ''[[yolB]]'' | ||
* ''[[yolC]]'' | * ''[[yolC]]'' | ||
| + | * ''[[yolD]]'' | ||
* ''[[yomD]]'' | * ''[[yomD]]'' | ||
* ''[[yomE]]'' | * ''[[yomE]]'' | ||
| Line 52: | Line 64: | ||
* ''[[yomJ]]'' | * ''[[yomJ]]'' | ||
* ''[[yomK]]'' | * ''[[yomK]]'' | ||
| + | * ''[[yomL]]'' | ||
* ''[[yomM]]'' | * ''[[yomM]]'' | ||
* ''[[yomN]]'' | * ''[[yomN]]'' | ||
| Line 132: | Line 145: | ||
* ''[[yoqT]]'' | * ''[[yoqT]]'' | ||
* ''[[yoqU]]'' | * ''[[yoqU]]'' | ||
| + | * ''[[yoqW]]'' | ||
* ''[[yoqX]]'' | * ''[[yoqX]]'' | ||
* ''[[yoqY]]'' | * ''[[yoqY]]'' | ||
| − | + | ||
* ''[[yorA]]'' | * ''[[yorA]]'' | ||
* ''[[yorB]]'' | * ''[[yorB]]'' | ||
| Line 186: | Line 200: | ||
* ''[[yotD]]'' | * ''[[yotD]]'' | ||
* ''[[yotE]]'' | * ''[[yotE]]'' | ||
| + | * ''[[yotF]]'' | ||
* ''[[yotG]]'' | * ''[[yotG]]'' | ||
* ''[[yotH]]'' | * ''[[yotH]]'' | ||
| Line 193: | Line 208: | ||
* ''[[yotL]]'' | * ''[[yotL]]'' | ||
* ''[[yotM]]'' | * ''[[yotM]]'' | ||
| − | |||
* ''[[youA]]'' | * ''[[youA]]'' | ||
| + | * ''[[youB]]'' | ||
* ''[[yoyH]]'' | * ''[[yoyH]]'' | ||
* ''[[yoyI]]'' | * ''[[yoyI]]'' | ||
| Line 203: | Line 218: | ||
==Key publications== | ==Key publications== | ||
| − | <pubmed> 9781889 10376821 </pubmed> | + | <pubmed> 9781889 10376821 12949151 34100162 </pubmed> |
| + | |||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 09:20, 17 June 2021
| Parent categories | |
| Neighbouring categories |
|
| Related categories |
none |
Contents
Important notes
- In 168, SP-beta disrupts the ypqP gene
- A strain devoid of PBSX prophage , SP-beta prophage and the Skin element (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in Jan Maarten van Dijl's lab PubMed
Genes in this functional category
- as-yonT
- bdbA
- bdbB
- bhlA
- bhlB
- blyA
- bsrG
- cwlP
- ligB
- mtbP
- nonA
- nrdEB
- pghZ
- sprA
- sprB
- SR4
- sspC
- sunA
- sunI
- sunS
- sunT
- uvrX
- yojW
- yokB
- yokC
- yokD
- yokE
- yokF
- yokG
- yokH
- yokI
- yokJ
- yokK
- yokL
- yolA
- yolB
- yolC
- yolD
- yomD
- yomE
- yomF
- yomG
- yomH
- yomJ
- yomK
- yomL
- yomM
- yomN
- yomO
- yomP
- yomQ
- yomR
- yomS
- yomT
- yomU
- yomV
- yomW
- yomX
- yomY
- yomZ
- yonA
- yonB
- yonC
- yonD
- yonE
- yonF
- yonG
- yonH
- yonI
- yonJ
- yonK
- yonN
- yonO
- yonP
- yonR
- yonS
- yonT
- yonU
- yonV
- yonX
- yopA
- yopB
- yopC
- yopD
- yopE
- yopF
- yopG
- yopH
- yopI
- yopJ
- yopK
- yopL
- yopM
- yopN
- yopO
- yopP
- yopQ
- yopR
- yopS
- yopT
- yopU
- yopV
- yopW
- yopX
- yopY
- yopZ
- yoqA
- yoqB
- yoqC
- yoqD
- yoqE
- yoqF
- yoqG
- yoqH
- yoqI
- yoqJ
- yoqK
- yoqL
- yoqM
- yoqN
- yoqO
- yoqP
- yoqR
- yoqS
- yoqT
- yoqU
- yoqW
- yoqX
- yoqY
- yorA
- yorB
- yorC
- yorD
- yorE
- yorF
- yorG
- yorH
- yorI
- yorJ
- yorK
- yorL
- yorM
- yorN
- yorO
- yorP
- yorQ
- yorR
- yorS
- yorT
- yorV
- yorW
- yorX
- yorY
- yorZ
- yosA
- yosB
- yosC
- yosD
- yosE
- yosF
- yosG
- yosH
- yosI
- yosJ
- yosK
- yosL
- yosM
- yosP
- yosQ
- yosR
- yosS
- yosT
- yosU
- yosV
- yosW
- yosX
- yotB
- yotC
- yotD
- yotE
- yotF
- yotG
- yotH
- yotI
- yotJ
- yotK
- yotL
- yotM
- youA
- youB
- yoyH
- yoyI
- yoyJ
- yoyK/1
- yoyK/2
- yozP
Key publications
Katharina Kohm, Robert Hertel
The life cycle of SPβ and related phages.
Arch Virol: 2021, 166(8);2119-2130
[PubMed:34100162]
[WorldCat.org]
[DOI]
(I p)
Helga Westers, Ronald Dorenbos, Jan Maarten van Dijl, Jorrit Kabel, Tony Flanagan, Kevin M Devine, Florence Jude, Simone J Seror, Aaron C Beekman, Elise Darmon, Caroline Eschevins, Anne de Jong, Sierd Bron, Oscar P Kuipers, Alessandra M Albertini, Haike Antelmann, Michael Hecker, Nicola Zamboni, Uwe Sauer, Claude Bruand, Dusko S Ehrlich, Juan C Alonso, Margarita Salas, Wim J Quax
Genome engineering reveals large dispensable regions in Bacillus subtilis.
Mol Biol Evol: 2003, 20(12);2076-90
[PubMed:12949151]
[WorldCat.org]
[DOI]
(P p)
Vladimir Lazarevic, Andreas Düsterhöft, Blazenka Soldo, Helmut Hilbert, Catherine Mauël, Dimitri Karamata
Nucleotide sequence of the Bacillus subtilis temperate bacteriophage SPbetac2.
Microbiology (Reading): 1999, 145 ( Pt 5);1055-1067
[PubMed:10376821]
[WorldCat.org]
[DOI]
(P p)
V Lazarevic
Is there a relic of a spliceosomal intron in Bacillus subtilis temperate phage SPbeta?
Mol Microbiol: 1998, 29(6);1523-6
[PubMed:9781889]
[WorldCat.org]
(P p)
