Difference between revisions of "Transcription"
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* 3.2.4. [[RNases]] | * 3.2.4. [[RNases]] | ||
|Related= | |Related= | ||
| + | * [[Transcription factors and their control]] | ||
* [[sigma factors]] | * [[sigma factors]] | ||
* [[RNA polymerase]] | * [[RNA polymerase]] | ||
| + | * [[genome-wide analyses]] | ||
|}} | |}} | ||
__TOC__ | __TOC__ | ||
<br><br><br><br><br> | <br><br><br><br><br> | ||
| − | == | + | == [http://cellpublisher.gobics.de/subtiexpress/ SubtiExpress] - A database integrating gene expression of all genes under 104 conditions == |
| − | |||
== Genes in this functional category == | == Genes in this functional category == | ||
| Line 25: | Line 26: | ||
* ''[[rpoC]]'' | * ''[[rpoC]]'' | ||
* ''[[rpoE]]'' | * ''[[rpoE]]'' | ||
| − | * ''[[ | + | * ''[[rpoY]]'' |
* ''[[yloH]]'' | * ''[[yloH]]'' | ||
=== [[Sigma factors]] === | === [[Sigma factors]] === | ||
| − | * | + | :*[[SigA]]: housekeeping sigma factor |
| − | * | + | :*[[SigB]]: general stress sigma factor |
| − | * | + | :*[[SigD]]: sigma factor for chemotaxis and motility genes |
| − | * | + | :*[[SigE]]: early mother cell-specific sporulation sigma factor |
| − | * | + | :*[[SigF]]: early forespore-specific sporulation sigma factor |
| − | * | + | :*[[SigG]]: late forespore-specific sporulation sigma factor |
| − | * | + | :*[[SigH]]: sigma factor that controls genes of the transition phase |
| − | * | + | :*[[SigI]]: |
| − | * | + | :*[[SigK]]: late mother cell-specific sporulation sigma factor |
| − | * | + | :*[[SigL]]: enhancer-dependent sigma factor (Sigma-54 family) |
| − | * | + | :*[[SigM]]: ECF sigma factor, controls genes required at high salt concentrations |
| − | * | + | :*[[SigV]]: ECF sigma factor |
| − | * | + | :*[[SigW]]: ECF sigma factor, mediates the transcriptional response to cell wall stress {{PubMed|12207695}} |
| − | * | + | :*[[SigX]]: ECF sigma factor |
| − | * | + | :*[[SigY]]: ECF sigma factor |
| − | * | + | :*[[SigZ]]: ECF sigma factor |
| − | * | + | :*[[Xpf]] |
| − | * | + | :*[[YlaC]] |
| − | * | + | :*[[SigO]]-[[RsoA]]: (composite sigma factor) |
| − | |||
| − | |||
=== Transcription elongation/ termination === | === Transcription elongation/ termination === | ||
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* ''[[nusG]]'' | * ''[[nusG]]'' | ||
* ''[[rho]]'' | * ''[[rho]]'' | ||
| + | |||
| + | ==Important publications== | ||
| + | <pubmed> 21350489 22087258 22383849 24789973 27195891 28723971</pubmed> | ||
| + | |||
| + | ==Reviews== | ||
| + | <pubmed>18599813 14527287 12455702 12213655 12073657 7708009 19489723 10329121 21478900 22210308 24237659 26132790,29856930</pubmed> | ||
| + | |||
| + | =Back to [[categories]]= | ||
Latest revision as of 11:10, 4 June 2018
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Contents
SubtiExpress - A database integrating gene expression of all genes under 104 conditions
Genes in this functional category
RNA polymerase
Sigma factors
- SigA: housekeeping sigma factor
- SigB: general stress sigma factor
- SigD: sigma factor for chemotaxis and motility genes
- SigE: early mother cell-specific sporulation sigma factor
- SigF: early forespore-specific sporulation sigma factor
- SigG: late forespore-specific sporulation sigma factor
- SigH: sigma factor that controls genes of the transition phase
- SigI:
- SigK: late mother cell-specific sporulation sigma factor
- SigL: enhancer-dependent sigma factor (Sigma-54 family)
- SigM: ECF sigma factor, controls genes required at high salt concentrations
- SigV: ECF sigma factor
- SigW: ECF sigma factor, mediates the transcriptional response to cell wall stress PubMed
- SigX: ECF sigma factor
- SigY: ECF sigma factor
- SigZ: ECF sigma factor
- Xpf
- YlaC
- SigO-RsoA: (composite sigma factor)
Transcription elongation/ termination
Important publications
Reviews
Kevin S Lang, Houra Merrikh
The Clash of Macromolecular Titans: Replication-Transcription Conflicts in Bacteria.
Annu Rev Microbiol: 2018, 72;71-88
[PubMed:29856930]
[WorldCat.org]
[DOI]
(I p)
Georgiy A Belogurov, Irina Artsimovitch
Regulation of Transcript Elongation.
Annu Rev Microbiol: 2015, 69;49-69
[PubMed:26132790]
[WorldCat.org]
[DOI]
(I p)
Julio A Freyre-González, Alejandra M Manjarrez-Casas, Enrique Merino, Mario Martinez-Nuñez, Ernesto Perez-Rueda, Rosa-María Gutiérrez-Ríos
Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis.
BMC Syst Biol: 2013, 7;127
[PubMed:24237659]
[WorldCat.org]
[DOI]
(I e)
Lakshminarayan M Iyer, L Aravind
Insights from the architecture of the bacterial transcription apparatus.
J Struct Biol: 2012, 179(3);299-319
[PubMed:22210308]
[WorldCat.org]
[DOI]
(I p)
Thomas J Santangelo, Irina Artsimovitch
Termination and antitermination: RNA polymerase runs a stop sign.
Nat Rev Microbiol: 2011, 9(5);319-29
[PubMed:21478900]
[WorldCat.org]
[DOI]
(I p)
Evgeny Nudler
RNA polymerase active center: the molecular engine of transcription.
Annu Rev Biochem: 2009, 78;335-61
[PubMed:19489723]
[WorldCat.org]
[DOI]
(I p)
P J Lewis, G P Doherty, J Clarke
Transcription factor dynamics.
Microbiology (Reading): 2008, 154(Pt 7);1837-1844
[PubMed:18599813]
[WorldCat.org]
[DOI]
(P p)
Tanja M Gruber, Carol A Gross
Multiple sigma subunits and the partitioning of bacterial transcription space.
Annu Rev Microbiol: 2003, 57;441-66
[PubMed:14527287]
[WorldCat.org]
[DOI]
(P p)
Sergei Borukhov, Konstantin Severinov
Role of the RNA polymerase sigma subunit in transcription initiation.
Res Microbiol: 2002, 153(9);557-62
[PubMed:12455702]
[WorldCat.org]
[DOI]
(P p)
Paul Gollnick, Paul Babitzke
Transcription attenuation.
Biochim Biophys Acta: 2002, 1577(2);240-50
[PubMed:12213655]
[WorldCat.org]
[DOI]
(P p)
John D Helmann
The extracytoplasmic function (ECF) sigma factors.
Adv Microb Physiol: 2002, 46;47-110
[PubMed:12073657]
[WorldCat.org]
[DOI]
(P p)
E Nudler
Transcription elongation: structural basis and mechanisms.
J Mol Biol: 1999, 288(1);1-12
[PubMed:10329121]
[WorldCat.org]
[DOI]
(P p)
W G Haldenwang
The sigma factors of Bacillus subtilis.
Microbiol Rev: 1995, 59(1);1-30
[PubMed:7708009]
[WorldCat.org]
[DOI]
(P p)
