Difference between revisions of "SP-beta prophage"

From SubtiWiki
Jump to: navigation, search
(Key publications)
 
(14 intermediate revisions by 2 users not shown)
Line 7: Line 7:
 
* 5.1.2. [[SPß prophage]]
 
* 5.1.2. [[SPß prophage]]
 
* 5.1.3. [[Skin element]]
 
* 5.1.3. [[Skin element]]
* 5.1.4. [[Phage-related functions]]
+
* 5.1.4. [[Prophage 1]]
 +
* 5.1.5. [[Prophage 3]]
 +
* 5.1.6. [[Phage-related functions]]
 
|Related=
 
|Related=
 
none  
 
none  
 
|}}
 
|}}
 +
 +
== Important notes==
 +
* In 168, SP-beta disrupts the ''[[ypqP]]'' gene
 +
* A strain devoid of [[PBSX prophage]] , [[SP-beta prophage]] and the [[Skin element]] (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in [[Jan Maarten van Dijl]]'s lab {{PubMed|12949151}}
  
 
== Genes in this functional category ==
 
== Genes in this functional category ==
 +
* ''[[as-yonT]]''
 
* ''[[bdbA]]''
 
* ''[[bdbA]]''
 
* ''[[bdbB]]''
 
* ''[[bdbB]]''
Line 18: Line 25:
 
* ''[[bhlB]]''
 
* ''[[bhlB]]''
 
* ''[[blyA]]''
 
* ''[[blyA]]''
 +
* ''[[bsrG]]''
 
* ''[[cwlP]]''
 
* ''[[cwlP]]''
 
* ''[[ligB]]''
 
* ''[[ligB]]''
 
* ''[[mtbP]]''
 
* ''[[mtbP]]''
 +
* ''[[nonA]]''
 
* ''[[nrdEB]]''
 
* ''[[nrdEB]]''
 +
* ''[[pghZ]]''
 +
* ''[[sprA]]''
 +
* ''[[sprB]]''
 +
* ''[[SR4]]''
 
* ''[[sspC]]''
 
* ''[[sspC]]''
 
* ''[[sunA]]''
 
* ''[[sunA]]''
 
* ''[[sunI]]''
 
* ''[[sunI]]''
 +
* ''[[sunS]]''
 
* ''[[sunT]]''
 
* ''[[sunT]]''
 
* ''[[uvrX]]''
 
* ''[[uvrX]]''
 
* ''[[yojW]]''
 
* ''[[yojW]]''
* ''[[yokA]]''
 
 
* ''[[yokB]]''
 
* ''[[yokB]]''
 
* ''[[yokC]]''
 
* ''[[yokC]]''
Line 35: Line 48:
 
* ''[[yokF]]''
 
* ''[[yokF]]''
 
* ''[[yokG]]''
 
* ''[[yokG]]''
 +
* ''[[yokH]]''
 
* ''[[yokI]]''
 
* ''[[yokI]]''
 
* ''[[yokJ]]''
 
* ''[[yokJ]]''
Line 42: Line 56:
 
* ''[[yolB]]''
 
* ''[[yolB]]''
 
* ''[[yolC]]''
 
* ''[[yolC]]''
* ''[[yolJ]]''
+
* ''[[yolD]]''
 
* ''[[yomD]]''
 
* ''[[yomD]]''
 
* ''[[yomE]]''
 
* ''[[yomE]]''
Line 50: Line 64:
 
* ''[[yomJ]]''
 
* ''[[yomJ]]''
 
* ''[[yomK]]''
 
* ''[[yomK]]''
 +
* ''[[yomL]]''
 
* ''[[yomM]]''
 
* ''[[yomM]]''
 
* ''[[yomN]]''
 
* ''[[yomN]]''
Line 130: Line 145:
 
* ''[[yoqT]]''
 
* ''[[yoqT]]''
 
* ''[[yoqU]]''
 
* ''[[yoqU]]''
 +
* ''[[yoqW]]''
 
* ''[[yoqX]]''
 
* ''[[yoqX]]''
 
* ''[[yoqY]]''
 
* ''[[yoqY]]''
* ''[[yoqZ]]''
+
 
 
* ''[[yorA]]''
 
* ''[[yorA]]''
 
* ''[[yorB]]''
 
* ''[[yorB]]''
Line 184: Line 200:
 
* ''[[yotD]]''
 
* ''[[yotD]]''
 
* ''[[yotE]]''
 
* ''[[yotE]]''
 +
* ''[[yotF]]''
 
* ''[[yotG]]''
 
* ''[[yotG]]''
 
* ''[[yotH]]''
 
* ''[[yotH]]''
Line 191: Line 208:
 
* ''[[yotL]]''
 
* ''[[yotL]]''
 
* ''[[yotM]]''
 
* ''[[yotM]]''
* ''[[yotN]]''
 
 
* ''[[youA]]''
 
* ''[[youA]]''
 +
* ''[[youB]]''
 
* ''[[yoyH]]''
 
* ''[[yoyH]]''
 
* ''[[yoyI]]''
 
* ''[[yoyI]]''
Line 201: Line 218:
  
 
==Key publications==
 
==Key publications==
<pubmed> 9781889 10376821 </pubmed>  
+
<pubmed> 9781889 10376821 12949151 34100162 </pubmed>
 +
 
 
=Back to [[categories]]=
 
=Back to [[categories]]=

Latest revision as of 09:20, 17 June 2021

Parent categories
Neighbouring categories
Related categories

none

Important notes

Genes in this functional category

Key publications

Katharina Kohm, Robert Hertel
The life cycle of SPβ and related phages.
Arch Virol: 2021, 166(8);2119-2130
[PubMed:34100162] [WorldCat.org] [DOI] (I p)

Helga Westers, Ronald Dorenbos, Jan Maarten van Dijl, Jorrit Kabel, Tony Flanagan, Kevin M Devine, Florence Jude, Simone J Seror, Aaron C Beekman, Elise Darmon, Caroline Eschevins, Anne de Jong, Sierd Bron, Oscar P Kuipers, Alessandra M Albertini, Haike Antelmann, Michael Hecker, Nicola Zamboni, Uwe Sauer, Claude Bruand, Dusko S Ehrlich, Juan C Alonso, Margarita Salas, Wim J Quax
Genome engineering reveals large dispensable regions in Bacillus subtilis.
Mol Biol Evol: 2003, 20(12);2076-90
[PubMed:12949151] [WorldCat.org] [DOI] (P p)

Vladimir Lazarevic, Andreas Düsterhöft, Blazenka Soldo, Helmut Hilbert, Catherine Mauël, Dimitri Karamata
Nucleotide sequence of the Bacillus subtilis temperate bacteriophage SPbetac2.
Microbiology (Reading): 1999, 145 ( Pt 5);1055-1067
[PubMed:10376821] [WorldCat.org] [DOI] (P p)

V Lazarevic
Is there a relic of a spliceosomal intron in Bacillus subtilis temperate phage SPbeta?
Mol Microbiol: 1998, 29(6);1523-6
[PubMed:9781889] [WorldCat.org] (P p)


Back to categories