Difference between revisions of "SurA"
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length''' || bp | + | |style="background:#ABCDEF;" align="center"| '''Gene length''' || 280 bp |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yndK]]'', ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yndK]]'', ''[[pghL]]'' |
|- | |- | ||
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt Gene sequence (+200bp) ]''' | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt Gene sequence (+200bp) ]''' | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:SurA_context.jpg]] |
| + | |- | ||
| + | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=S655_1915134_1915264_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:surA_expression.png|500px]] | ||
|- | |- | ||
|} | |} | ||
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<br/><br/><br/><br/><br/> | <br/><br/><br/><br/><br/> | ||
| + | = [[Categories]] containing this gene/protein = | ||
| + | {{SubtiWiki category|[[ncRNA]]}} | ||
| + | |||
| + | = This gene is a member of the following [[regulons]] = | ||
| + | |||
| + | |||
=The gene= | =The gene= | ||
=== Basic information === | === Basic information === | ||
| − | * ''' | + | * '''Locus tag:''' |
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?] | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?] | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
| Line 46: | Line 56: | ||
=== Additional information=== | === Additional information=== | ||
| + | |||
| + | |||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''surA'' [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed] |
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed] |
| − | * '''Regulation:''' | + | * '''Regulation:''' induced at the beginning of sporulation ([[Spo0A]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed] |
| − | * '''Regulatory mechanism:''' | + | * '''Regulatory mechanism:''' [[Spo0A]]: unknown, indirect effect, probably via [[AbrB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16385044 PubMed] |
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
| Line 71: | Line 83: | ||
=Labs working on this gene/RNA= | =Labs working on this gene/RNA= | ||
| − | |||
=Your additional remarks= | =Your additional remarks= | ||
| Line 77: | Line 88: | ||
=References= | =References= | ||
| − | + | <pubmed>16385044,20525796</pubmed> | |
| + | |||
| + | [[Category:small RNA]] | ||
Latest revision as of 08:59, 13 July 2015
- Description: small RNA
| Gene name | surA |
| Synonyms | |
| Essential | no |
| Product | small RNA |
| Function | unknown |
| Gene length | 280 bp |
| Immediate neighbours | yndK, pghL |
| Gene sequence (+200bp) | |
Genetic context 
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: no entry
- Structure:
Additional information
Expression and regulation
- Operon: surA PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
Labs working on this gene/RNA
Your additional remarks
References
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
Jessica M Silvaggi, John B Perkins, Richard Losick
Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis.
J Bacteriol: 2006, 188(2);532-41
[PubMed:16385044]
[WorldCat.org]
[DOI]
(P p)
