Difference between revisions of "DtrR"

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m (Jstuelk moved page YwaE to DtrR: 25733610)
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* '''Description:''' similar to transcriptional regulator (MarR family) <br/><br/>
+
* '''Description:''' D-Tyr resistance regulator ([[MarR family]]) <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ywaE''
+
|''dtrR''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ipa-10r ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ywaE, ipa-10r ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+
|style="background:#ABCDEF;" align="center"| '''Product''' || transcription factor ([[MarR family]])
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+
|style="background:#ABCDEF;" align="center"|'''Function''' || resistance to D-Tyr
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38450 ywaE]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38450 dtrR]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 8.763   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 8.763   
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<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
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= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
 +
{{SubtiWiki regulon|[[DtrR regulon]]}}
  
 +
= The [[DtrR regulon]]: ''[[dtrR]]''-''[[tyrZ]]'' =
  
 
=The gene=
 
=The gene=
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=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
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=== Basic information/ Evolution ===
 
=== Basic information/ Evolution ===
  
* '''Catalyzed reaction/ biological activity:'''  
+
* '''Catalyzed reaction/ biological activity:''' repression of the ''[[dtrR]]-[[tyrZ]]'' operon {{PubMed|25733610}}
  
* '''Protein family:'''
+
* '''Protein family:''' [[MarR family]]
  
 
* '''Paralogous protein(s):'''
 
* '''Paralogous protein(s):'''
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* '''Interactions:'''
 
* '''Interactions:'''
  
* '''Localization:'''
+
* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''[[dtrR]]-[[tyrZ]]'' {{PubMed|25733610}}
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywaE_3946394_3946909_1 ywaE] {{PubMed|22383849}}
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywaE_3946394_3946909_1 dtrR] {{PubMed|22383849}}
  
 
* '''Sigma factor:'''  
 
* '''Sigma factor:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** [[DtrR]]: transcriptional repression {{PubMed|25733610}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  

Revision as of 13:04, 4 March 2015

  • Description: D-Tyr resistance regulator (MarR family)

Gene name dtrR
Synonyms ywaE, ipa-10r
Essential no
Product transcription factor (MarR family)
Function resistance to D-Tyr
Gene expression levels in SubtiExpress: dtrR
MW, pI 19 kDa, 8.763
Gene length, protein length 513 bp, 171 aa
Immediate neighbours ywaF, tyrZ
Sequences Protein DNA DNA_with_flanks
Genetic context
YwaE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwaE expression.png















Categories containing this gene/protein

transcription factors and their control

This gene is a member of the following regulons

DtrR regulon

The DtrR regulon: dtrR-tyrZ

The gene

Basic information

  • Locus tag: BSU38450

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: repression of the dtrR-tyrZ operon PubMed
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References