Difference between revisions of "BmrB"
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' regulatory leader peptide for the control of ''[[bmrC]]-[[bmrD]]'' expression <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
| Line 9: | Line 9: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || leader peptide |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || control of ''[[bmrC]]-[[bmrD]]'' expression |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09700 yheJ] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09700 yheJ] | ||
| Line 58: | Line 58: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
| Line 103: | Line 101: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[bmrB]]-[[bmrC]]-[[bmrD]]'' {{PubMed|25217586}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yheJ_1045037_1045198_1 yheJ] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yheJ_1045037_1045198_1 yheJ] {{PubMed|22383849}} | ||
| Line 110: | Line 108: | ||
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ''[[bmrB]]-[[bmrC]]-[[bmrD]]'' expression only occurs during the late-exponential and stationary growth stages ([[AbrB]]) {{PubMed|25217586}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 135: | Line 134: | ||
=References= | =References= | ||
| − | <pubmed>20817675 </pubmed> | + | <pubmed>20817675 25217586</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 08:47, 19 September 2014
| Gene name | yheJ |
| Synonyms | |
| Essential | no |
| Product | leader peptide |
| Function | control of bmrC-bmrD expression |
| Gene expression levels in SubtiExpress: yheJ | |
| MW, pI | 6 kDa, 11.08 |
| Gene length, protein length | 159 bp, 53 aa |
| Immediate neighbours | nhaX, bmrC |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU09700
Phenotypes of a mutant
Database entries
- BsubCyc: BSU09700
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU09700
- Structure:
- UniProt: O07551
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
bmrB-bmrC-bmrD expression only occurs during the late-exponential and stationary growth stages (AbrB) PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Ewoud Reilman, Ruben A T Mars, Jan Maarten van Dijl, Emma L Denham
The multidrug ABC transporter BmrC/BmrD of Bacillus subtilis is regulated via a ribosome-mediated transcriptional attenuation mechanism.
Nucleic Acids Res: 2014, 42(18);11393-407
[PubMed:25217586]
[WorldCat.org]
[DOI]
(I p)
Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.
Nucleic Acids Res: 2011, 39(2);414-28
[PubMed:20817675]
[WorldCat.org]
[DOI]
(I p)
