Difference between revisions of "YabC"
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00360&redirect=T BSU00360] | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00360&redirect=T BSU00360] | ||
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3kwp 3KWP] (from ''Lactobacillus brevis'', 51% identity) | * '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3kwp 3KWP] (from ''Lactobacillus brevis'', 51% identity) | ||
Revision as of 12:45, 2 April 2014
- Description: similar to 16S rRNA methyltransferase
| Gene name | yabC |
| Synonyms | |
| Essential | no |
| Product | 16S rRNA methyltransferase |
| Function | rRNA modification |
| Gene expression levels in SubtiExpress: yabC | |
| MW, pI | 32 kDa, 5.518 |
| Gene length, protein length | 876 bp, 292 aa |
| Immediate neighbours | yazA, abrB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU00360
Phenotypes of a mutant
Database entries
- BsubCyc: BSU00360
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
- The E.coli homolog: rsmI
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: UPF0011 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU00360
- Structure: 3KWP (from Lactobacillus brevis, 51% identity)
- UniProt: P37544
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
Satoshi Kimura, Tsutomu Suzuki
Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA.
Nucleic Acids Res: 2010, 38(4);1341-52
[PubMed:19965768]
[WorldCat.org]
[DOI]
(I p)
