Difference between revisions of "CspD"
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
{{SubtiWiki category|[[RNA chaperones]]}}, | {{SubtiWiki category|[[RNA chaperones]]}}, | ||
| − | {{SubtiWiki category|[[cold stress proteins]]}} | + | {{SubtiWiki category|[[cold stress proteins]]}}, |
| + | [[most abundant proteins]] | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cspD_2307905_2308105_1 cspD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cspD_2307905_2308105_1 cspD] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' subject to Clp-dependent proteolysis upon glucose starvation {{PubMed|17981983}} | + | * '''Additional information:''' |
| + | ** subject to Clp-dependent proteolysis upon glucose starvation {{PubMed|17981983}} | ||
| + | ** belongs to the 100 [[most abundant proteins]] {{PubMed|15378759}} | ||
=Biological materials = | =Biological materials = | ||
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<pubmed>12171653,12838604,</pubmed> | <pubmed>12171653,12838604,</pubmed> | ||
==Original publications== | ==Original publications== | ||
| − | <pubmed>12399512,11752341,11717297,9920884,12427936,11591689,9379903,17981983, </pubmed> | + | <pubmed>12399512,11752341,11717297,9920884,12427936,11591689,9379903,17981983, 15378759</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 12:53, 5 March 2014
- Description: cold shock protein
| Gene name | cspD |
| Synonyms | |
| Essential | no |
| Product | cold shock protein |
| Function | RNA chaperone |
| Gene expression levels in SubtiExpress: cspD | |
| MW, pI | 7 kDa, 4.31 |
| Gene length, protein length | 198 bp, 66 aa |
| Immediate neighbours | ugtP, degR |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
RNA chaperones, cold stress proteins, most abundant proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU21930
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P51777
- KEGG entry: [2]
- E.C. number:
Additional information
- subject to Clp-dependent proteolysis upon glucose starvation PubMed
Expression and regulation
- Operon:
- Regulation:
- weakly induced by cold shock PubMed
- Regulatory mechanism:
- Additional information:
- subject to Clp-dependent proteolysis upon glucose starvation PubMed
- belongs to the 100 most abundant proteins PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Michael H Weber, Mohamed A Marahiel
Bacterial cold shock responses.
Sci Prog: 2003, 86(Pt 1-2);9-75
[PubMed:12838604]
[WorldCat.org]
[DOI]
(P p)
Michael H W Weber, Mohamed A Marahiel
Coping with the cold: the cold shock response in the Gram-positive soil bacterium Bacillus subtilis.
Philos Trans R Soc Lond B Biol Sci: 2002, 357(1423);895-907
[PubMed:12171653]
[WorldCat.org]
[DOI]
(P p)
Original publications
