Difference between revisions of "GerAB"

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(Database entries)
(Basic information/ Evolution)
Line 74: Line 74:
  
 
* '''Protein family:'''
 
* '''Protein family:'''
** amino acid, polyamine, organocation (APC) family of transporters, [http://www.tcdb.org/search/result.php?tc=2.A.3 TC 2.A.3]
+
** [[APC superfamily of transport proteins|amino acid, polyamine, organocation (APC) superfamily of transporters]], [http://www.tcdb.org/search/result.php?tc=2.A.3 TC 2.A.3]
  
 
* '''Paralogous protein(s):''' [[GerBB]], [[GerKB]], [[YndE]]
 
* '''Paralogous protein(s):''' [[GerBB]], [[GerKB]], [[YndE]]

Revision as of 18:42, 28 November 2013

  • Description: nutrient receptor, germination response to L-alanine

Gene name gerAB
Synonyms
Essential no
Product nutrient receptor
Function germination response to L-alanine
Gene expression levels in SubtiExpress: gerAB
Interactions involving this protein in SubtInteract: GerAB
MW, pI 41 kDa, 9.601
Gene length, protein length 1095 bp, 365 aa
Immediate neighbours gerAA, gerAC
Sequences Protein DNA DNA_with_flanks
Genetic context
GerAB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
GerAB expression.png















Categories containing this gene/protein

germination, membrane proteins

This gene is a member of the following regulons

SigF regulon, SigG regulon, SpoVT regulon

The gene

Basic information

  • Locus tag: BSU33060

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:
    • predicted to be an integral membrane protein with ten membrane-spanning helices PubMed

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
    • expressed during sporulation in the forespore (SigF, SigG, SpoVT) PubMed
    • expression level depends on sporulation conditions (medim composition, temperature) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed