Difference between revisions of "SdpA"

From SubtiWiki
Jump to: navigation, search
Line 1: Line 1:
−
* '''Description:''' maybe involved in cannibalism of siblings <br/><br/>
+
* '''Description:''' required for [[SdpC]] toxin maturation <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
Line 12: Line 12:
 
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown  
 
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+
|style="background:#ABCDEF;" align="center"|'''Function''' || maturation of the [[SdpC]] toxin
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33750 sdpA]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33750 sdpA]
Line 35: Line 35:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
−
<br/><br/><br/><br/>
 
−
<br/><br/><br/><br/>
 
−
 
−
 
 
<br/><br/>
 
<br/><br/>
  
Line 93: Line 89:
  
 
* '''[[Localization]]:'''
 
* '''[[Localization]]:'''
 +
** cytoplasm {{PubMed|23687264}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 112: Line 109:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sdpA_3464289_3464765_1 sdpA] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sdpA_3464289_3464765_1 sdpA] {{PubMed|22383849}}
  
−
* '''Sigma factor:'''  
+
* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:''' repressed by glucose (8-fold) [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed]   
 
* '''Regulation:''' repressed by glucose (8-fold) [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed]   
Line 149: Line 146:
 
<pubmed>20955377 </pubmed>
 
<pubmed>20955377 </pubmed>
 
==Original Publications==
 
==Original Publications==
−
<big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
+
<pubmed>12817086,,14651647,15687200,15743949,15687200,17720793,12850135, 23687264 21815947</pubmed>
−
<big>'''RNA processing in ''Bacillus subtilis'': identification of targets of the essential RNase Y.''' </big>
 
−
<big>Mol Microbiol. 2011 81(6): 1459-1473. </big>
 
−
[http://www.ncbi.nlm.nih.gov/pubmed/21815947 PubMed:21815947]
 
−
<pubmed>12817086,,14651647,15687200,15743949,15687200,17720793,12850135, </pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:07, 27 May 2013

  • Description: required for SdpC toxin maturation

Gene name sdpA
Synonyms yvaW
Essential no
Product unknown
Function maturation of the SdpC toxin
Gene expression levels in SubtiExpress: sdpA
MW, pI 18 kDa, 9.766
Gene length, protein length 474 bp, 158 aa
Immediate neighbours yvaV, sdpB
Sequences Protein DNA DNA_with_flanks
Genetic context
YvaW context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SdpA expression.png















Categories containing this gene/protein

toxins, antitoxins and immunity against toxins

This gene is a member of the following regulons

AbrB regulon, Rok regulon, Spo0A regulon

The gene

Basic information

  • Locus tag: BSU33750

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: repressed by glucose (8-fold) PubMed
  • Additional information:
    • the amount of the mRNA is substantially decreased upon depletion of RNase Y PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Original Publications

Retrieved from "http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SdpA&oldid=192250"