Difference between revisions of "YxaL"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxaM]]'', ''[[yxaJ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxaM]]'', ''[[yxaJ]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39940 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39940 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39940 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39940 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39940 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39940 DNA_with_flanks]
 
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Revision as of 11:42, 14 May 2013

  • Description: similar to Ser/Thr kinase, increases the processivity of the PcrA helicase

Gene name yxaL
Synonyms yxaK
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yxaL
Interactions involving this protein in SubtInteract: YxaL
MW, pI 43 kDa, 6.379
Gene length, protein length 1230 bp, 410 aa
Immediate neighbours yxaM, yxaJ
Sequences Protein DNA DNA_with_flanks
Genetic context
YxaL context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YxaL expression.png
























Categories containing this gene/protein

protein modification

This gene is a member of the following regulons

AbrB regulon, Rok regulon

The gene

Basic information

  • Locus tag: BSU39940

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
    • pGP392 (N-terminal Strep-tag, purification from B. subtilis, for SPINE, in pGP380), available in Stülke lab
    • for expression, purification in E. coli with N-terminal Strep-tag, in pGP172: pGP824, available in Stülke lab
  • 'lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862] [WorldCat.org] [DOI] (I p)

Mark Albano, Wiep Klaas Smits, Linh T Y Ho, Barbara Kraigher, Ines Mandic-Mulec, Oscar P Kuipers, David Dubnau
The Rok protein of Bacillus subtilis represses genes for cell surface and extracellular functions.
J Bacteriol: 2005, 187(6);2010-9
[PubMed:15743949] [WorldCat.org] [DOI] (P p)

M-F Noirot-Gros, P Soultanas, D B Wigley, S D Ehrlich, P Noirot, M-A Petit
The beta-propeller protein YxaL increases the processivity of the PcrA helicase.
Mol Genet Genomics: 2002, 267(3);391-400
[PubMed:12073041] [WorldCat.org] [DOI] (P p)

Ken-Ichi Yoshida, Izumi Ishio, Eishi Nagakawa, Yoshiyuki Yamamoto, Mami Yamamoto, Yasutaro Fujita
Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome.
Microbiology (Reading): 2000, 146 ( Pt 3);573-579
[PubMed:10746760] [WorldCat.org] [DOI] (P p)