Difference between revisions of "SdpC"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || killing of non-sporulating sister cells | |style="background:#ABCDEF;" align="center"|'''Function''' || killing of non-sporulating sister cells | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33770 sdpC] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SdpC SdpC] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SdpC SdpC] | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sdpB]]'', ''[[sdpI]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sdpB]]'', ''[[sdpI]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33770 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33770 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33770 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yvaY_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yvaY_context.gif]] | ||
Revision as of 13:51, 13 May 2013
- Description: toxin, collapses the proton motive force and induces autolysis, kills non-sporulating cells, induces activity of SigW
| Gene name | sdpC |
| Synonyms | yvaY |
| Essential | no |
| Product | toxin, kills non-sporulating cells |
| Function | killing of non-sporulating sister cells |
| Gene expression levels in SubtiExpress: sdpC | |
| Interactions involving this protein in SubtInteract: SdpC | |
| MW, pI | 22 kDa, 9.611 |
| Gene length, protein length | 609 bp, 203 aa |
| Immediate neighbours | sdpB, sdpI |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
toxins, antitoxins and immunity against toxins
This gene is a member of the following regulons
AbrB regulon, Rok regulon, Spo0A regulon
The gene
Basic information
- Locus tag: BSU33770
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- toxin, collapses the proton motive force and induces autolysis PubMed
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification: the meture SDP is a 42-residue peptide with one disulfide bridge PubMed
- Cofactor(s):
- Effectors of protein activity:
- Localization: secreted (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O34344
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
José Eduardo González-Pastor
Cannibalism: a social behavior in sporulating Bacillus subtilis.
FEMS Microbiol Rev: 2011, 35(3);415-24
[PubMed:20955377]
[WorldCat.org]
[DOI]
(I p)
Original Publications
Additional publications: PubMed
Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. Mol Microbiol. 2011 81(6): 1459-1473. PubMed:21815947
