Difference between revisions of "YvrL"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of Sig([[YvrI]]-[[YvrHa]]) activity | |style="background:#ABCDEF;" align="center"|'''Function''' || control of Sig([[YvrI]]-[[YvrHa]]) activity | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33250 yvrL] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 15 kDa, 9.427 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 15 kDa, 9.427 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[oxdC]]'', ''[[yvrN]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[oxdC]]'', ''[[yvrN]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33250 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yvrL_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yvrL_context.gif]] | ||
Revision as of 13:49, 13 May 2013
| Gene name | yvrL |
| Synonyms | |
| Essential | no |
| Product | anti-Sig(YvrI-YvrHa) |
| Function | control of Sig(YvrI-YvrHa) activity |
| Gene expression levels in SubtiExpress: yvrL | |
| MW, pI | 15 kDa, 9.427 |
| Gene length, protein length | 408 bp, 136 aa |
| Immediate neighbours | oxdC, yvrN |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
sigma factors and their control, acid stress proteins (controlled by YvrI-YvrHa), membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU33250
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O34686
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation: induced by acidic growth conditions PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
John Helmann, Cornell University, USA Homepage
Your additional remarks
References
Shawn R MacLellan, John D Helmann, Haike Antelmann
The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis.
J Bacteriol: 2009, 191(3);931-9
[PubMed:19047353]
[WorldCat.org]
[DOI]
(I p)
Shawn R MacLellan, Tina Wecke, John D Helmann
A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis.
Mol Microbiol: 2008, 69(4);954-67
[PubMed:18573182]
[WorldCat.org]
[DOI]
(I p)
