Difference between revisions of "YjdI"
| Line 13: | Line 13: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || maturation of tRNA | |style="background:#ABCDEF;" align="center"|'''Function''' || maturation of tRNA | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12060 yjdI] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 8.755 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 8.755 | ||
| Line 21: | Line 21: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yjdH]]'', ''[[yjzH]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yjdH]]'', ''[[yjzH]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12060 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12060 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12060 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yjdI_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yjdI_context.gif]] | ||
Revision as of 12:34, 13 May 2013
- Description: similiar to Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase
| Gene name | yjdI |
| Synonyms | |
| Essential | no |
| Product | Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase |
| Function | maturation of tRNA |
| Gene expression levels in SubtiExpress: yjdI | |
| MW, pI | 17 kDa, 8.755 |
| Gene length, protein length | 477 bp, 159 aa |
| Immediate neighbours | yjdH, yjzH |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU12060
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
E. coli homolog: [2]
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31650
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Songon An, Karin Musier-Forsyth
Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex.
J Biol Chem: 2005, 280(41);34465-72
[PubMed:16087664]
[WorldCat.org]
[DOI]
(P p)
Benfang Ruan, Dieter Söll
The bacterial YbaK protein is a Cys-tRNAPro and Cys-tRNA Cys deacylase.
J Biol Chem: 2005, 280(27);25887-91
[PubMed:15886196]
[WorldCat.org]
[DOI]
(P p)
Fai-Chu Wong, Penny J Beuning, Carmen Silvers, Karin Musier-Forsyth
An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing.
J Biol Chem: 2003, 278(52);52857-64
[PubMed:14530268]
[WorldCat.org]
[DOI]
(P p)
